PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023524743.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 310aa    MW: 33853.3 Da    PI: 8.6531
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023524743.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.24.1e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++ +++l+q+
  XP_023524743.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSSNWHLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_023524743.1  99 AVEAVLKGA 107
                     ***998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS SNWHLCQAAV EAVLKGAPII PINSEAATTG  120
DGPPLKAYDI RHISKDENSA ASNDGGANRR VRTRCRFKRS AVKDKESTGI VSAVAESTRR  180
LFSSTEINRS SSGESSLTHQ SDSPHLEHES KETESMISVE TADVSPPSAP SAFFRSESSH  240
VQRKFTNHDG GRMTIPESEL ALELTLGMEP VSRAQHVVPM KKRKIEANDG LRPNKETCNT  300
ILGLDFVAGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-104LBD family protein