PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524583.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 507aa MW: 56948.5 Da PI: 6.5029

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	57.6	3.6e-18	27	82	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 l++lpe++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+ae+a++++e XP_023524583.1 27 SLEDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAE 82 58999***********************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MPVSLRFGHW LARFSGHSNI RQKHGMSLED LPESQRADAV SSLVYEASAR IRDPVYGCAG 60 AICHLQKQIN ELQAEVAKTH AELVNMQCHQ ANLVALICKE LTQTPAPTPP PPDHCSLDNN 120 FSSATPQSYP LFDDSNIWEV RWVQTELAVE VYPLRLQLLE VPKGDRSTMR ISKKETIGEL 180 HRRACEIFDL NLEQVCIWDY YGHRKHALMN DMDKTLDDAN LQMDQDILVE IINHGNNNAS 240 DGCASYVQDN GTADKEATSI SLEPSKSNLN VAGGMSNKGM SKTEVVQSQN QTSSIRELDN 300 ASGHTGVSTR GSSCGLTGLL NLGNTCFMNS AIQCLVHTPE FARYFREDYH QEINWQNPLG 360 MVGELAMAFG DLLRKLWAPG RTSVAPRPFK AKLARFAPQF SGYNQHDSQE LLAFLLDGLH 420 EDLNRVKHKP YIKSRDADGR PDEEVADEYW ANHIARNDSI IVDVCQVCKI TYFHCKLMVR 480 NKLCKVFKIK GMTLWHASFF EVWALAG

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MPVSLRFGHW LARFSGHSNI RQKHGMSLED LPESQRADAV SSLVYEASAR IRDPVYGCAG  60
AICHLQKQIN ELQAEVAKTH AELVNMQCHQ ANLVALICKE LTQTPAPTPP PPDHCSLDNN  120
FSSATPQSYP LFDDSNIWEV RWVQTELAVE VYPLRLQLLE VPKGDRSTMR ISKKETIGEL  180
HRRACEIFDL NLEQVCIWDY YGHRKHALMN DMDKTLDDAN LQMDQDILVE IINHGNNNAS  240
DGCASYVQDN GTADKEATSI SLEPSKSNLN VAGGMSNKGM SKTEVVQSQN QTSSIRELDN  300
ASGHTGVSTR GSSCGLTGLL NLGNTCFMNS AIQCLVHTPE FARYFREDYH QEINWQNPLG  360
MVGELAMAFG DLLRKLWAPG RTSVAPRPFK AKLARFAPQF SGYNQHDSQE LLAFLLDGLH  420
EDLNRVKHKP YIKSRDADGR PDEEVADEYW ANHIARNDSI IVDVCQVCKI TYFHCKLMVR  480
NKLCKVFKIK GMTLWHASFF EVWALAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-28	LBD family protein