PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524264.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 352aa MW: 39720.1 Da PI: 9.0746

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	51	73	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_023524264.1 51 FICEICNKGFQRDQNLQLHRRGH 73 89*******************88 PP
2	zf-C2H2	13.1	0.00029	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_023524264.1 127 WKCEKCSKRYAVQSDWKAHSKIC 149 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MMKKGNLTVD EHPPLLPLPP SKKKRNLPGN PDPDAEVIAL SPKALLTTNR FICEICNKGF 60 QRDQNLQLHR RGHNLPWKLK QRSNKEVRKK VYVCPEPSCV HHHPSRALGD LTGIKKHFCR 120 KHGEKKWKCE KCSKRYAVQS DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ 180 ESTNFASSAM NNSNPIQPIF STLRQFSLKT ENQDPFYPST SNILNPFNPN PNPNPTSIGF 240 GLAGPGSSLN PVFGSAWEMN SPNIMAFEEP SFEEALNGIL MNNRANKDGD KCSGGGAEEI 300 TRDLLGLRAL ARQPDHHMFE NEIVNDHLNL GSSSSMFGLH LNHQTQTMFW RD

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MMKKGNLTVD EHPPLLPLPP SKKKRNLPGN PDPDAEVIAL SPKALLTTNR FICEICNKGF  60
QRDQNLQLHR RGHNLPWKLK QRSNKEVRKK VYVCPEPSCV HHHPSRALGD LTGIKKHFCR  120
KHGEKKWKCE KCSKRYAVQS DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ  180
ESTNFASSAM NNSNPIQPIF STLRQFSLKT ENQDPFYPST SNILNPFNPN PNPNPTSIGF  240
GLAGPGSSLN PVFGSAWEMN SPNIMAFEEP SFEEALNGIL MNNRANKDGD KCSGGGAEEI  300
TRDLLGLRAL ARQPDHHMFE NEIVNDHLNL GSSSSMFGLH LNHQTQTMFW RD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	90	KLKQRSNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-112	C2H2 family protein