PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023524262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 352aa MW: 39720.1 Da PI: 9.0746 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 2e-05 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_023524262.1 51 FICEICNKGFQRDQNLQLHRRGH 73 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_023524262.1 127 WKCEKCSKRYAVQSDWKAHSKIC 149 58*****************9876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 352 aa Download sequence |
MMKKGNLTVD EHPPLLPLPP SKKKRNLPGN PDPDAEVIAL SPKALLTTNR FICEICNKGF 60 QRDQNLQLHR RGHNLPWKLK QRSNKEVRKK VYVCPEPSCV HHHPSRALGD LTGIKKHFCR 120 KHGEKKWKCE KCSKRYAVQS DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ 180 ESTNFASSAM NNSNPIQPIF STLRQFSLKT ENQDPFYPST SNILNPFNPN PNPNPTSIGF 240 GLAGPGSSLN PVFGSAWEMN SPNIMAFEEP SFEEALNGIL MNNRANKDGD KCSGGGAEEI 300 TRDLLGLRAL ARQPDHHMFE NEIVNDHLNL GSSSSMFGLH LNHQTQTMFW RD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 78 | 90 | KLKQRSNKEVRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-112 | C2H2 family protein |