PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524184.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 486aa MW: 55118.7 Da PI: 8.9854

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50	7.3e-16	199	258	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a+ k++g XP_023524184.1 199 SQYRGVSRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAAFKYWG 258 78*****************988886678446***********************98 PP
2	AP2	51.7	2.2e-16	301	352	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_023524184.1 301 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 352 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MPNSFLASQH YNGDLVSPLS VMPFNSDGSL CFMESLSTLQ PQEMLPNISP KLEDFLGSAN 60 HGREATALSL DSIYYNQNDG ADAVSERQHC LNLFKQQEQH ILFGMFQFPA EDANKESHIA 120 SHSYEIRHAL EQRIDRMSSQ DVEPLSLSMS PGSQSSCVTA PTQNCHPGLA TMETKKRGLL 180 GRKKPVHRKS IDTFGQRTSQ YRGVSRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD 240 MEEKAARAYD LAAFKYWGPS THLNFPLKNY QVEIEEMKNM NRQEYVAHLR RKSSGFSRGA 300 SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGTNAVTNFD 360 TSRYNVERIM VSSSLLSREI ARRNKEHKLT NAIERKEPTQ NIDRIDPSEI SNSNNIDLRS 420 TFDDTMLLDR NTTIESIDRK SVTSGGYLNH LMGVETAMGK DSRKFRAHFS NASVSLPVMS 480 SVWNDV

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MPNSFLASQH YNGDLVSPLS VMPFNSDGSL CFMESLSTLQ PQEMLPNISP KLEDFLGSAN  60
HGREATALSL DSIYYNQNDG ADAVSERQHC LNLFKQQEQH ILFGMFQFPA EDANKESHIA  120
SHSYEIRHAL EQRIDRMSSQ DVEPLSLSMS PGSQSSCVTA PTQNCHPGLA TMETKKRGLL  180
GRKKPVHRKS IDTFGQRTSQ YRGVSRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD  240
MEEKAARAYD LAAFKYWGPS THLNFPLKNY QVEIEEMKNM NRQEYVAHLR RKSSGFSRGA  300
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGTNAVTNFD  360
TSRYNVERIM VSSSLLSREI ARRNKEHKLT NAIERKEPTQ NIDRIDPSEI SNSNNIDLRS  420
TFDDTMLLDR NTTIESIDRK SVTSGGYLNH LMGVETAMGK DSRKFRAHFS NASVSLPVMS  480
SVWNDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-127	AP2 family protein