PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523444.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 391aa MW: 43116.6 Da PI: 9.0758

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523444.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_023523444.1 49 YVCEICNQGFQRDQNLQMHRRRH 71 9*********************9 PP
2	zf-C2H2	15.8	3.9e-05	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_023523444.1 126 WVCQKCSKGYAVQSDYKAHLKTC 148 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MIASATTSSD PFSSLENGTK RKRRPAGTPD PDAEVVSLSP KTLLESDRYV CEICNQGFQR 60 DQNLQMHRRR HKVPWKLLKR ESPVVRKRVF VCPEPTCLHH DPCHALGDLV GIKKHFRRKH 120 SNHKQWVCQK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDACNMGHLQ 180 QQSQTLQPAA CLSQTASSPS PSSDTNISSA PNWAALIAPP ISKPPDANNN GSPHDHNLDL 240 KLSTGSNSNP NPNLNPNLVE GNKGCSSIKL QLSIGSCEFM DGARDVRDEA GQTLRVALAE 300 KAYAEEARQQ AKRQVEIAEQ EFANAKRMRQ QAQAELDKAI TLKQTVIKRV NSTILEITCQ 360 ACQKQFQAKT TTTTTTTAAS TTTTTTASCR S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MIASATTSSD PFSSLENGTK RKRRPAGTPD PDAEVVSLSP KTLLESDRYV CEICNQGFQR  60
DQNLQMHRRR HKVPWKLLKR ESPVVRKRVF VCPEPTCLHH DPCHALGDLV GIKKHFRRKH  120
SNHKQWVCQK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDACNMGHLQ  180
QQSQTLQPAA CLSQTASSPS PSSDTNISSA PNWAALIAPP ISKPPDANNN GSPHDHNLDL  240
KLSTGSNSNP NPNLNPNLVE GNKGCSSIKL QLSIGSCEFM DGARDVRDEA GQTLRVALAE  300
KAYAEEARQQ AKRQVEIAEQ EFANAKRMRQ QAQAELDKAI TLKQTVIKRV NSTILEITCQ  360
ACQKQFQAKT TTTTTTTAAS TTTTTTASCR S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-138	C2H2 family protein