PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523406.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 550aa MW: 60050.8 Da PI: 7.4522

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.7	1.2e-33	204	261	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k XP_023523406.1 204 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 261 8**************************************.*************85 PP
2	WRKY	106	1.9e-33	373	431	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnhe XP_023523406.1 373 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHE 431 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MASSSGSLDT SANSHPSFTF STHPFMTTSY SDLLAAGSND LPSSAAAHGA HRGSGTGVPK 60 FKSLPPPSLP LLPPTLIPSS LFSIPPGLSP TELLDSPVLL SASYVLPSPT TGSFPSQSLN 120 WKNNSGYNQQ SIKEENKFLS EFSFLTQSSQ PPTSFQPAPT TEGKKQDGSM QSFSPEYGIV 180 QNQSQNNAGR DYPQQSQTVN RRSDDGYNWR KYGQKQVKGS ENPRSYYKCT FPNCPTKKKV 240 ERSLDGQITE IVYKGSHNHP KPQSTRKSSL SSAVSASNPA ANDMAEQSFT TQGSGQFDGV 300 ATPENSLISV GDDDFDRSSQ RSKSAGDDND DDEPEAKRWR RDGDNNEGIS AAGNRTVREP 360 RVVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NPGCPVRKHV ERASHDLRAV 420 ITTYEGKHNH EVPPARGSGS HSLSRPFPSN DLSATAIHPL AVTHRANNDA GGSNNKDNLL 480 HGLRLQQSSD NQTPFTLEMV QNPNGFSFPE FGNSMGMGSY MNPTQSNDSL FVRAKEEPRD 540 HDMFIQSLLC

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MASSSGSLDT SANSHPSFTF STHPFMTTSY SDLLAAGSND LPSSAAAHGA HRGSGTGVPK  60
FKSLPPPSLP LLPPTLIPSS LFSIPPGLSP TELLDSPVLL SASYVLPSPT TGSFPSQSLN  120
WKNNSGYNQQ SIKEENKFLS EFSFLTQSSQ PPTSFQPAPT TEGKKQDGSM QSFSPEYGIV  180
QNQSQNNAGR DYPQQSQTVN RRSDDGYNWR KYGQKQVKGS ENPRSYYKCT FPNCPTKKKV  240
ERSLDGQITE IVYKGSHNHP KPQSTRKSSL SSAVSASNPA ANDMAEQSFT TQGSGQFDGV  300
ATPENSLISV GDDDFDRSSQ RSKSAGDDND DDEPEAKRWR RDGDNNEGIS AAGNRTVREP  360
RVVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NPGCPVRKHV ERASHDLRAV  420
ITTYEGKHNH EVPPARGSGS HSLSRPFPSN DLSATAIHPL AVTHRANNDA GGSNNKDNLL  480
HGLRLQQSSD NQTPFTLEMV QNPNGFSFPE FGNSMGMGSY MNPTQSNDSL FVRAKEEPRD  540
HDMFIQSLLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-110	WRKY family protein