PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023522898.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 686aa    MW: 78329.2 Da    PI: 6.1834
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023522898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.43.7e-1153166833373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+avs+ d++ a++lL++++++++p+gd +qRla +f+++L++rla  ++ ly  ++++ets    ++ l+ +++f +++P+ ++s++ 
  XP_023522898.1 316 TLLIQCAQAVSNYDQRTANELLNQIRHHSNPSGDGNQRLAYFFAKGLETRLAA-GTPLYMPFASNETS---AADILKTYQMFIKACPFRRMSYFY 406
                     69**************************************************9.99999888888877...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN++Il+ +e+ +r+Hi+Df+i +GlQWp+L+q L++Rp+gpp+lRiTg++ p++    +e++e+tg+rLa+++++++vpfe +v +a+++e+++
  XP_023522898.1 407 ANRTILKLAENVTRLHIVDFGILYGLQWPCLIQRLSNRPGGPPKLRITGIELPQPRfrPAERVEQTGRRLAHYCKRFNVPFEHKV-LAQKWETVK 500
                     ******************************************************9999**************************9.6******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+v+++E ++V +++++++++de+v  +s+rd+vLkl+++++P+++++   + + n++ F +rf eal yys+lfd++ea++pr++ +r   
  XP_023522898.1 501 YEDLNVDRDELTIVTCMFRMKNVPDETVVANSPRDKVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRYLC 595
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     Ere+lgr+i+nv+aceg er+er et+++W+ r ++aGFk+vpl+++  k+++ ++++ + + + v+++ +++++gWk+r +  +S+W
  XP_023522898.1 596 EREILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQELLKNVEKIVNTEYHQDFAVDQDGAWMLQGWKGRIIDGLSCW 683
                     **********************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MDNLLDDFPN SWNNFHYNPH LSNGFFNVNR EIFDPLHHNS SSSSSSTSPS LSPSSTEGNS  60
PDCHDTSNTM LKYITEMLMD EEEDLKTKPC MLIDCLALQA AEKSFYDVLG KKYPPSPIGL  120
GDSTQNFSSD LGFFKAEDES ESFSGDSSVF PPSDKPLLSQ DSLFGMQYIF HFRQGAVEAS  180
KFLPVNGKFG TIDLDNDSSA SVPSRAVDFS WLAAVGDARS TLPNGLFREK KNHQREDSDE  240
ELRSTKQSAT FADDSSLSEL FDELLLCRGE SRQSPSWGSD ESSENESSKK SRKKMKGKKN  300
RSRKQESCVE VVDLWTLLIQ CAQAVSNYDQ RTANELLNQI RHHSNPSGDG NQRLAYFFAK  360
GLETRLAAGT PLYMPFASNE TSAADILKTY QMFIKACPFR RMSYFYANRT ILKLAENVTR  420
LHIVDFGILY GLQWPCLIQR LSNRPGGPPK LRITGIELPQ PRFRPAERVE QTGRRLAHYC  480
KRFNVPFEHK VLAQKWETVK YEDLNVDRDE LTIVTCMFRM KNVPDETVVA NSPRDKVLKL  540
IRKINPDLFI HEVTNGSFNT PFFNTRFKEA LFYYSSLFDM YEATVPRDNP QRYLCEREIL  600
GRDIMNVIAC EGLERVERPE TYKQWQVRNT RAGFKQVPLD QELLKNVEKI VNTEYHQDFA  660
VDQDGAWMLQ GWKGRIIDGL SCWVVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292305RKKMKGKKNRSRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-170GRAS family protein