PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023522894.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 688aa    MW: 78526.4 Da    PI: 6.2561
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023522894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.43.7e-1153186853373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+avs+ d++ a++lL++++++++p+gd +qRla +f+++L++rla  ++ ly  ++++ets    ++ l+ +++f +++P+ ++s++ 
  XP_023522894.1 318 TLLIQCAQAVSNYDQRTANELLNQIRHHSNPSGDGNQRLAYFFAKGLETRLAA-GTPLYMPFASNETS---AADILKTYQMFIKACPFRRMSYFY 408
                     69**************************************************9.99999888888877...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN++Il+ +e+ +r+Hi+Df+i +GlQWp+L+q L++Rp+gpp+lRiTg++ p++    +e++e+tg+rLa+++++++vpfe +v +a+++e+++
  XP_023522894.1 409 ANRTILKLAENVTRLHIVDFGILYGLQWPCLIQRLSNRPGGPPKLRITGIELPQPRfrPAERVEQTGRRLAHYCKRFNVPFEHKV-LAQKWETVK 502
                     ******************************************************9999**************************9.6******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+v+++E ++V +++++++++de+v  +s+rd+vLkl+++++P+++++   + + n++ F +rf eal yys+lfd++ea++pr++ +r   
  XP_023522894.1 503 YEDLNVDRDELTIVTCMFRMKNVPDETVVANSPRDKVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRYLC 597
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     Ere+lgr+i+nv+aceg er+er et+++W+ r ++aGFk+vpl+++  k+++ ++++ + + + v+++ +++++gWk+r +  +S+W
  XP_023522894.1 598 EREILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQELLKNVEKIVNTEYHQDFAVDQDGAWMLQGWKGRIIDGLSCW 685
                     **********************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    
MDNLLDDFPN SWNNFHYNPH LSNGFFNVNR EIFDPLHHHS SSSSSSSSTS PSLSPSSTEG  60
NSPDCHDTSN TMLKYITEML MDEEEDLKTK PCMLIDCLAL QAAEKSFYDV LGKKYPPSPI  120
GLGDSTQNFS SDLGFFKAED ESESFSGDSS VFPPSDKPLL SQDSLFGMQY IFHFRQGAVE  180
ASKFLPVNGK FGTIDLDNDS SASVPSRAVD FSWLAAVGDA RSTLPNGLFR EKKNHQREDS  240
DEELRSTKQS ATFADDSSLS ELFDELLLCR GESRQSPSWG SDESSENESS KKSRKKMKGK  300
KNRSRKQESC VEVVDLWTLL IQCAQAVSNY DQRTANELLN QIRHHSNPSG DGNQRLAYFF  360
AKGLETRLAA GTPLYMPFAS NETSAADILK TYQMFIKACP FRRMSYFYAN RTILKLAENV  420
TRLHIVDFGI LYGLQWPCLI QRLSNRPGGP PKLRITGIEL PQPRFRPAER VEQTGRRLAH  480
YCKRFNVPFE HKVLAQKWET VKYEDLNVDR DELTIVTCMF RMKNVPDETV VANSPRDKVL  540
KLIRKINPDL FIHEVTNGSF NTPFFNTRFK EALFYYSSLF DMYEATVPRD NPQRYLCERE  600
ILGRDIMNVI ACEGLERVER PETYKQWQVR NTRAGFKQVP LDQELLKNVE KIVNTEYHQD  660
FAVDQDGAWM LQGWKGRIID GLSCWVVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294307RKKMKGKKNRSRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-170GRAS family protein