PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023522485.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRAS

Protein Properties

Length: 497aa MW: 56026.7 Da PI: 6.3827

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023522485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	187.5	8.8e-58	316	495	3	185
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+avs+ d++ a++lL++++++++p+gd +qRla +f+++L++rla ++ ly ++++ets ++ l+ +++f +++P+ ++s++ XP_023522485.1 316 TLLIQCAQAVSNYDQRTANELLNQIRHHSNPSGDGNQRLAYFFAKGLETRLAA-GTPLYMPFASNETS---AADILKTYQMFIKACPFRRMSYFY 406 69************************************************9.99999888888877...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 aN++Il+ +e+ +r+Hi+Df+i +GlQWp+L+q L++Rp+gpp+lRiTg++ p++g +e++e+tg+rLa+++++++vpfe +vl a++ XP_023522485.1 407 ANRTILKLAENVTRLHIVDFGILYGLQWPCLIQRLSNRPGGPPKLRITGIELPQPGfrPAERVEQTGRRLAHYCKRFNVPFEHKVL-AQK 495 ***************************************************9**************************96.655 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MDNLLDDFPN SWNNFHYNPH LSNGFFNVNR EIFDPLHHNS SSSSSSTSPS LSPSSTEGNS 60 PDCHDTSNTM LKYITEMLMD EEEDLKTKPC MLIDCLALQA AEKSFYDVLG KKYPPSPIGL 120 GDSTQNFSSD LGFFKAEDES ESFSGDSSVF PPSDKPLLSQ DSLFGMQYIF HFRQGAVEAS 180 KFLPVNGKFG TIDLDNDSSA SVPSRAVDFS WLAAVGDARS TLPNGLFREK KNHQREDSDE 240 ELRSTKQSAT FADDSSLSEL FDELLLCRGE SRQSPSWGSD ESSENESSKK SRKKMKGKKN 300 RSRKQESCVE VVDLWTLLIQ CAQAVSNYDQ RTANELLNQI RHHSNPSGDG NQRLAYFFAK 360 GLETRLAAGT PLYMPFASNE TSAADILKTY QMFIKACPFR RMSYFYANRT ILKLAENVTR 420 LHIVDFGILY GLQWPCLIQR LSNRPGGPPK LRITGIELPQ PGFRPAERVE QTGRRLAHYC 480 KRFNVPFEHK VLAQKWE

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MDNLLDDFPN SWNNFHYNPH LSNGFFNVNR EIFDPLHHNS SSSSSSTSPS LSPSSTEGNS  60
PDCHDTSNTM LKYITEMLMD EEEDLKTKPC MLIDCLALQA AEKSFYDVLG KKYPPSPIGL  120
GDSTQNFSSD LGFFKAEDES ESFSGDSSVF PPSDKPLLSQ DSLFGMQYIF HFRQGAVEAS  180
KFLPVNGKFG TIDLDNDSSA SVPSRAVDFS WLAAVGDARS TLPNGLFREK KNHQREDSDE  240
ELRSTKQSAT FADDSSLSEL FDELLLCRGE SRQSPSWGSD ESSENESSKK SRKKMKGKKN  300
RSRKQESCVE VVDLWTLLIQ CAQAVSNYDQ RTANELLNQI RHHSNPSGDG NQRLAYFFAK  360
GLETRLAAGT PLYMPFASNE TSAADILKTY QMFIKACPFR RMSYFYANRT ILKLAENVTR  420
LHIVDFGILY GLQWPCLIQR LSNRPGGPPK LRITGIELPQ PGFRPAERVE QTGRRLAHYC  480
KRFNVPFEHK VLAQKWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	305	RKKMKGKKNRSRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-75	GRAS family protein