PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023522467.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 443aa MW: 47728.4 Da PI: 9.8247

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023522467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	207	229	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ + H + H XP_023522467.1 207 TCHKCGEQFNKWDAAEAHHLSkH 229 7*****************98877 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MPTVWLSLKK SLHCKSGPSE VHDPKTRRNL GAILTRKTGV GRSGCSRSIA NLKDVIHGGS 60 KRHLDKPPSC SPRSIGSSEF LNPITHEVIL TNSRCELKIT GFHGAFPPDV PSSADEPLTD 120 RPAASTFVGT LTPGTPGPGG HPTMHYFNPS FRSSSRKFPF REGFGSSNKS GGGGGARSLG 180 GGGGVHTSNR ISLETEIDGN RSSSAVTCHK CGEQFNKWDA AEAHHLSKHA VTELVEGDSS 240 RKIVEIICRT SWLKSENQSG RIERVLKVHN MQRTLARFEE HRETVKIKAS KLPKKHPRCL 300 ADGNELLRFY GTTVACSLGL NGSSSLCISE KCCVCRIIRN GFSAKTEMKE GIGVFTTSTS 360 ARAFTSIEAS GGGEEGGMVR KAMVVCRVIA GRVHRPLENI QEMAGQTGFD SLAGKVGLHS 420 NIEELYLLNP RALLPCFVVI CKA

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MPTVWLSLKK SLHCKSGPSE VHDPKTRRNL GAILTRKTGV GRSGCSRSIA NLKDVIHGGS  60
KRHLDKPPSC SPRSIGSSEF LNPITHEVIL TNSRCELKIT GFHGAFPPDV PSSADEPLTD  120
RPAASTFVGT LTPGTPGPGG HPTMHYFNPS FRSSSRKFPF REGFGSSNKS GGGGGARSLG  180
GGGGVHTSNR ISLETEIDGN RSSSAVTCHK CGEQFNKWDA AEAHHLSKHA VTELVEGDSS  240
RKIVEIICRT SWLKSENQSG RIERVLKVHN MQRTLARFEE HRETVKIKAS KLPKKHPRCL  300
ADGNELLRFY GTTVACSLGL NGSSSLCISE KCCVCRIIRN GFSAKTEMKE GIGVFTTSTS  360
ARAFTSIEAS GGGEEGGMVR KAMVVCRVIA GRVHRPLENI QEMAGQTGFD SLAGKVGLHS  420
NIEELYLLNP RALLPCFVVI CKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-115	C2H2 family protein