PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023522306.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 519aa MW: 56361.7 Da PI: 5.5528

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023522306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	335	383	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_023522306.1 335 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 383 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MNGKDEFEDE CRTSDPMSIS SSWQFANESI GFVSTGNPSV VSNGDLGVSS CPSTSMSNLF 60 TPTVLNDHTN SQSSRFCSGF NEQNSIDDSN VTVVDGEGLS SLRSSSDRIL GMDWNQQSSW 120 MKGVFSGNVP GMFPANLSQL PADSAFIERA ARFSCFNGGV FGAPPAGSFG ISGSNGIHSR 180 GAFGSQELNK VVLEGKEKSP PKTEKESEMS RDRAKQGCVG ESGNESDETG FSGGQDEQCT 240 LGGTIAEPSR EGLCFKKRKR GDRNMELAQV KEAPKQINET AKNGALTRQN GDRDQNPSFT 300 TNKPAGKQGK QDSQPSDAPK EEYIHVRARR GQATNSHSLA ERVRREKISE RMRLLQDLVP 360 GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPKL DFNIEELLTK EIMQSKAGPS 420 LFGFPPDLPM PYLPQHPTHH GVIPPCIPNM GSSPDLLRRT INSQLTSLVG GFKEPVQLPN 480 VWENELHNVV PRNFDVAAPT SGQDVDGSPP PCNNTRAEL

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MNGKDEFEDE CRTSDPMSIS SSWQFANESI GFVSTGNPSV VSNGDLGVSS CPSTSMSNLF  60
TPTVLNDHTN SQSSRFCSGF NEQNSIDDSN VTVVDGEGLS SLRSSSDRIL GMDWNQQSSW  120
MKGVFSGNVP GMFPANLSQL PADSAFIERA ARFSCFNGGV FGAPPAGSFG ISGSNGIHSR  180
GAFGSQELNK VVLEGKEKSP PKTEKESEMS RDRAKQGCVG ESGNESDETG FSGGQDEQCT  240
LGGTIAEPSR EGLCFKKRKR GDRNMELAQV KEAPKQINET AKNGALTRQN GDRDQNPSFT  300
TNKPAGKQGK QDSQPSDAPK EEYIHVRARR GQATNSHSLA ERVRREKISE RMRLLQDLVP  360
GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPKL DFNIEELLTK EIMQSKAGPS  420
LFGFPPDLPM PYLPQHPTHH GVIPPCIPNM GSSPDLLRRT INSQLTSLVG GFKEPVQLPN  480
VWENELHNVV PRNFDVAAPT SGQDVDGSPP PCNNTRAEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-87	bHLH family protein