PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023522202.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 147aa    MW: 16453.9 Da    PI: 8.3899
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023522202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-3951041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C++dC+++p fp+++p++fa+vh+++Gasnv k+l++lp + r++a+++l++eA++r++dPvyG+vg+i++lq+ql+ ++++la
  XP_023522202.1   5 RCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPEAAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLA 99 
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023522202.1 100 KTRAE 104
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MISGRCAACK YLRRRCPSDC IFSPFFPSNN PQRFAIVHRI YGASNVAKFL HQLPLHLRPE  60
AAETLFFEAK CRIEDPVYGC VGIISQLQHQ LHVAETQLAK TRAEIAFLAS NLQEAQPQDF  120
AVQPIQGPNT IGFSQIGLST PAHWFNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.19e-55LBD family protein