PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023522014.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 504aa MW: 56929.9 Da PI: 7.2617

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023522014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	79.2	5e-25	190	243	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++Wt+ LH+rF++a++ + G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ XP_023522014.1 190 KAKVVWTNSLHNRFLQAIRLI-GLDKAVPKKILEFMNVPGLTRENVASHLQKYRI 243 6799************999.******************************6 PP
2	Myb_DNA-binding	33	1.4e-10	193	242	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT ++ ++++a+++ G + +k+I + m+ g+t++++ s++qky+ XP_023522014.1 193 VVWTNSLHNRFLQAIRLIGLDkaVPKKILEFMNvPGLTRENVASHLQKYR 242 68***********************************************7 PP
3	Response_reg	68.9	2.2e-23	23	130	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vdD+ + + ++ +l+ +y +v + +++ eal++l++k+ +Dl+++D+ mp+m+Gl+l k+ ++e klp+i+++a ++++ +l+ l+ G XP_023522014.1 23 ILLVDDDATSLAVVSAMLRLCKY-QVVTRRSPIEALDTLRAKKgfFDLVVTDLHMPQMNGLQLQKQVTKEF-KLPVIMMSADEKPSVILKSLEEG 115 89*******************.9999*******999999******************9999.9****************** PP ESEEEESS--HHHHH CS Response_reg 94 akdflsKpfdpeelv 108 ++ + +Kp++ +++ XP_023522014.1 116 VSFYMVKPISLDDVK 130 *******999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MDEEDGRCES VLESRMLSVD IHILLVDDDA TSLAVVSAML RLCKYQVVTR RSPIEALDTL 60 RAKKGFFDLV VTDLHMPQMN GLQLQKQVTK EFKLPVIMMS ADEKPSVILK SLEEGVSFYM 120 VKPISLDDVK QVWQYAITPK QTRTIIRPQF SIDKPSKKEI IKLSKSERTK NKTKKAKETR 180 VPQTSIAKRK AKVVWTNSLH NRFLQAIRLI GLDKAVPKKI LEFMNVPGLT RENVASHLQK 240 YRIFLKRVAE KGACNSMKIY SDCTLLRSSF ASSHFQFQSP LYTPKFQSQH PYLLEEQQLM 300 APLNYPSPLL GANYISHPTP PNPNLEIENS LTLNKPNFPF NGLVSSSTRN DHNFVSIENE 360 NPNGGLRLND NGVANHVQAT HDHNNGGFCG NFEGTNQVLE NKNVEENGVV LVSPKEGNDT 420 IAFGDQIGEH QNCFDVLSEI FMGHNHHNQT SLRRDEMGDM ELSHMWNGIE MEASSKQDLQ 480 PSTLSAQGWD DDMLRTFLGD ASFS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MDEEDGRCES VLESRMLSVD IHILLVDDDA TSLAVVSAML RLCKYQVVTR RSPIEALDTL  60
RAKKGFFDLV VTDLHMPQMN GLQLQKQVTK EFKLPVIMMS ADEKPSVILK SLEEGVSFYM  120
VKPISLDDVK QVWQYAITPK QTRTIIRPQF SIDKPSKKEI IKLSKSERTK NKTKKAKETR  180
VPQTSIAKRK AKVVWTNSLH NRFLQAIRLI GLDKAVPKKI LEFMNVPGLT RENVASHLQK  240
YRIFLKRVAE KGACNSMKIY SDCTLLRSSF ASSHFQFQSP LYTPKFQSQH PYLLEEQQLM  300
APLNYPSPLL GANYISHPTP PNPNLEIENS LTLNKPNFPF NGLVSSSTRN DHNFVSIENE  360
NPNGGLRLND NGVANHVQAT HDHNNGGFCG NFEGTNQVLE NKNVEENGVV LVSPKEGNDT  420
IAFGDQIGEH QNCFDVLSEI FMGHNHHNQT SLRRDEMGDM ELSHMWNGIE MEASSKQDLQ  480
PSTLSAQGWD DDMLRTFLGD ASFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	5e-53	ARR-B family protein