PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023521558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 725aa MW: 79724.5 Da PI: 6.8377 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21 | 5.7e-07 | 302 | 322 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_023521558.1 302 PCPDFRK-GACRHGDMCEYAHG 322 8******.*************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 725 aa Download sequence |
MCGGPEKSNS ASTTSARLPN PKDMNHLTVD CEDSFYSLLE LASDNDAEGF KSMMESDLFS 60 LNKSGLWYVR QKGSKQVVNE HRTPLMVAAT YGCVDVLKLI LSYPEVDVNL SSGTDKSTAL 120 HCATSSGSVN AVDIVDLLLS AGADPKTKDV NGDRPVDVIF VHPKLQKQNT RFRLEELLNN 180 HSSGSLDVSC LHLSIKTPDS ESPPLSSSLE DEFRSTPKSI SSPKFTDGFA NSTKEKKEYP 240 IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRHGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP 360 LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQTM SPSSNGVCHS 420 SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFNSQPRI LNDLNCFSQP 480 CPTPVSVSRS GWTQTLSPNN LEELFSSEIS SSPRFSDPAA NVFSPTRKST MLNQFQQQQQ 540 NMLSPINTSI MSPKNVDHHL LQASYGVSSP GRMSPRNTEP HSPMGSRFSA FVQREKHNLR 600 TLSSWELGSN VPSSLIGSPI NSLPKWGSPN GKVDWSVGKN ELGQQMRRSS SFEMGNNGEE 660 PDLSWVQTLV KESPPEMLKE KLAVPGRGGA ASGEGLTTTK PQLESTDHSV IGAWLEQMQL 720 DQLVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |