PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023521558.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 725aa    MW: 79724.5 Da    PI: 6.8377
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023521558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.7e-07302322526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_023521558.1 302 PCPDFRK-GACRHGDMCEYAHG 322
                     8******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    
MCGGPEKSNS ASTTSARLPN PKDMNHLTVD CEDSFYSLLE LASDNDAEGF KSMMESDLFS  60
LNKSGLWYVR QKGSKQVVNE HRTPLMVAAT YGCVDVLKLI LSYPEVDVNL SSGTDKSTAL  120
HCATSSGSVN AVDIVDLLLS AGADPKTKDV NGDRPVDVIF VHPKLQKQNT RFRLEELLNN  180
HSSGSLDVSC LHLSIKTPDS ESPPLSSSLE DEFRSTPKSI SSPKFTDGFA NSTKEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRHGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP  360
LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQTM SPSSNGVCHS  420
SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFNSQPRI LNDLNCFSQP  480
CPTPVSVSRS GWTQTLSPNN LEELFSSEIS SSPRFSDPAA NVFSPTRKST MLNQFQQQQQ  540
NMLSPINTSI MSPKNVDHHL LQASYGVSSP GRMSPRNTEP HSPMGSRFSA FVQREKHNLR  600
TLSSWELGSN VPSSLIGSPI NSLPKWGSPN GKVDWSVGKN ELGQQMRRSS SFEMGNNGEE  660
PDLSWVQTLV KESPPEMLKE KLAVPGRGGA ASGEGLTTTK PQLESTDHSV IGAWLEQMQL  720
DQLVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0C3H family protein