PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023521084.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARR-B
Protein Properties Length: 553aa    MW: 61671 Da    PI: 6.1845
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023521084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.27.5e-28306359256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  XP_023521084.1 306 LKVDWTPELHRKFVQAVEQL-GVNQAIPSRILELMKVEGLTRHNVASHLQKYRMH 359
                     5899****************.9*******************************96 PP
2Myb_DNA-binding43.66.7e-14308357248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT+e++ ++v+av+qlG +   +++I + m  +g+t+ ++ s++qky+
   XP_023521084.1 308 VDWTPELHRKFVQAVEQLGVNqaIPSRILELMKvEGLTRHNVASHLQKYR 357
                      57***********************************************7 PP
3Response_reg23.13.7e-09201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d + + +  +++ le+ +y +v +  +  +al  +  +   +++ ++ +  ++ dG   +k +++ + +lp i+++     +++ +++ +G
  XP_023521084.1  20 VLLLDGDSNSAAEIKTKLEEMEY-VVVTYCNENDALLAISSEPemFHVAIVEVTASDHDGT--FKFLEAVK-DLPTIMISNIHCLSTMMKCIALG 110
                     6788888888999999*******.999999999888888777778************9994..55555544.799*****9999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp+++++l++
  XP_023521084.1 111 AIEFLQKPVSEDKLRN 126
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MVCTASDLHG WKDFPKGLRV LLLDGDSNSA AEIKTKLEEM EYVVVTYCNE NDALLAISSE  60
PEMFHVAIVE VTASDHDGTF KFLEAVKDLP TIMISNIHCL STMMKCIALG AIEFLQKPVS  120
EDKLRNIWQH VVHKAFNAGG SAVPSSLKPI KESVASILHL ELENKENENQ VPHELEISSG  180
DNVDDHELLI LPEGSDKYPA PSTPQQKHGM RLVDQMNCLL EKECGEQDGE ESKSVETTCT  240
AQVENSQLSD KEVIKEEENS TDGCGAASNV DHELHDRDNI CSSEKNKSKA CGLGNPCRTK  300
VSGKKLKVDW TPELHRKFVQ AVEQLGVNQA IPSRILELMK VEGLTRHNVA SHLQKYRMHK  360
RHVLPKEEDG SWSSSKDPMR KNYYPHPQRH VMAYPPPYHS NHVMPVAPIG SWGHMACPSP  420
GVQMWAPPPG YPPWRPPDTW PWKSYLGVHG EAWGCPVTPP PPHSPFSSNP HQHISRFEYV  480
DVHDKSYGIA PSPVDLQLAD EEIDKVVKEA ISKPWLPLPL GLKPPSTESV LSELSRQQIS  540
TTPFHINGCK LLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-121ARR-B family protein