PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520794.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 148aa MW: 16841.8 Da PI: 7.9964

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	60	78	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 +f+ tG+C+yGd+C++ H+ XP_023520794.1 60 RFLTTGFCHYGDSCNYFHS 78 89**************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence
MPLGKYYCDY CEKQFQDTPF ARKRHLQSLS HHKAKALWFD SFRDSNQPLS HAFPTRLSNR 60 FLTTGFCHYG DSCNYFHSNN NPQYSSSHPI AGFPENNQAP NVPVNQFMEG SSLTGSLDRL 120 RTSWGNLPPS LMPPPEGGYP PLPFVDWG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-31	C3H family protein