PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023520660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 403aa MW: 44118.9 Da PI: 8.0144 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 48 | 74 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_023520660.1 48 PGEPDCSYYIRTGLCRFGATCRFNHPP 74 5789*********************97 PP | |||||||
2 | zf-CCCH | 39 | 1.4e-12 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_023520660.1 100 QPECQYYLKTGTCKFGATCKFHHPR 124 799********************96 PP | |||||||
3 | zf-CCCH | 36.2 | 9.9e-12 | 146 | 170 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_023520660.1 146 ETECAYYLRTGQCKFGNTCKFHHPQ 170 568********************97 PP | |||||||
4 | zf-CCCH | 38 | 2.7e-12 | 264 | 290 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_023520660.1 264 PGQPECQFYMKTGDCKFGAVCRFHHPR 290 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.3 | 5.3e-13 | 310 | 336 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_023520660.1 310 PGEPLCIFYSRYGICKFGPSCKFDHPM 336 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MEYDSGIPMS VTEGHSSALT PSLREDALWQ MNLGSGEIMG SGSYPVRPGE PDCSYYIRTG 60 LCRFGATCRF NHPPNRELVL SKNAIATARM KGEFPERIGQ PECQYYLKTG TCKFGATCKF 120 HHPRDKAGIA GRVALNILGY PLRPSETECA YYLRTGQCKF GNTCKFHHPQ PTNMMVSLRG 180 SPIYPTVQSP TPGQQSYPGG STNWSRASFI PSPRWQGPSS YASLILPQGV LSVPGWNTFN 240 DQLGSVSSSE SPQQTRENVF PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERVIPAPDCV 300 LSPIGLPLRP GEPLCIFYSR YGICKFGPSC KFDHPMGIFA YNLSAASTPN APVQHLFGTS 360 SGTTALSLSS EGLVEAGSAK PRRLSITETR EMSSDDENIE AEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-179 | C3H family protein |