PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520658.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 409aa MW: 44742.6 Da PI: 8.0144

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_023520658.1 54 PGEPDCSYYIRTGLCRFGATCRFNHPP 80 5789*********************97 PP
2	zf-CCCH	38.9	1.4e-12	106	130	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_023520658.1 106 QPECQYYLKTGTCKFGATCKFHHPR 130 799********************96 PP
3	zf-CCCH	36.2	1e-11	152	176	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_023520658.1 152 ETECAYYLRTGQCKFGNTCKFHHPQ 176 568********************97 PP
4	zf-CCCH	38	2.7e-12	270	296	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_023520658.1 270 PGQPECQFYMKTGDCKFGAVCRFHHPR 296 5789*********************96 PP
5	zf-CCCH	40.3	5.4e-13	316	342	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_023520658.1 316 PGEPLCIFYSRYGICKFGPSCKFDHPM 342 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MEYDSGIPMS VTEGHSSALT PSLREGSFAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS 60 YYIRTGLCRF GATCRFNHPP NRELVLSKNA IATARMKGEF PERIGQPECQ YYLKTGTCKF 120 GATCKFHHPR DKAGIAGRVA LNILGYPLRP SETECAYYLR TGQCKFGNTC KFHHPQPTNM 180 MVSLRGSPIY PTVQSPTPGQ QSYPGGSTNW SRASFIPSPR WQGPSSYASL ILPQGVLSVP 240 GWNTFNDQLG SVSSSESPQQ TRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERVI 300 PAPDCVLSPI GLPLRPGEPL CIFYSRYGIC KFGPSCKFDH PMGIFAYNLS AASTPNAPVQ 360 HLFGTSSGTT ALSLSSEGLV EAGSAKPRRL SITETREMSS DDENIEAEG

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MEYDSGIPMS VTEGHSSALT PSLREGSFAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS  60
YYIRTGLCRF GATCRFNHPP NRELVLSKNA IATARMKGEF PERIGQPECQ YYLKTGTCKF  120
GATCKFHHPR DKAGIAGRVA LNILGYPLRP SETECAYYLR TGQCKFGNTC KFHHPQPTNM  180
MVSLRGSPIY PTVQSPTPGQ QSYPGGSTNW SRASFIPSPR WQGPSSYASL ILPQGVLSVP  240
GWNTFNDQLG SVSSSESPQQ TRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERVI  300
PAPDCVLSPI GLPLRPGEPL CIFYSRYGIC KFGPSCKFDH PMGIFAYNLS AASTPNAPVQ  360
HLFGTSSGTT ALSLSSEGLV EAGSAKPRRL SITETREMSS DDENIEAEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-177	C3H family protein