PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520409.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 447aa MW: 50186.6 Da PI: 4.9917

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85	9.3e-27	305	389	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+ Li +r+++e+++r++ +k+ Wee+s m++ g++rs+k+Ckekwen+nk++k++ + k + +tcpyf++l+ XP_023520409.1 305 RWPRAEVQSLISLRTSLEHKFRATGSKGSIWEEISVEMQKVGYNRSAKKCKEKWENMNKYFKRTIGTGKAS-IANGKTCPYFQELD 389 8************************************************************99888875.666779****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MDLFTGDHRI PSSDSFPQHV APFPDSTDLL YAAPSAVFPS ADIIAHLPNP PPPPQKLRPI 60 RCNGRSPAGS QADNIFDGAL RSFQCVSSSP EGGFSGDQLC VANIDPCQYF NSSEKDDKPD 120 AKDNGGFSDI IGNNFFSEEE TKNGGTDAAT AAENLSRSLE GPQLDDDSCS TSDGGDDVLS 180 TKKHLNHKRK RTTRSLELFV ENLIMKVMDK QEEMHRQLID MIEKNEKERI VREEAWKQRE 240 IERMRRDEEL RAQETSRSLA IISFIQNLLG HEIQISQPVE NHCTEDDGGE SSIQKELKSD 300 PSSRRWPRAE VQSLISLRTS LEHKFRATGS KGSIWEEISV EMQKVGYNRS AKKCKEKWEN 360 MNKYFKRTIG TGKASIANGK TCPYFQELDT LYRNGVVNSG AVIDSTSTEH NSQAERSIDP 420 FHEEEAFVQG ESEREHVKQE ALEMTQL

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MDLFTGDHRI PSSDSFPQHV APFPDSTDLL YAAPSAVFPS ADIIAHLPNP PPPPQKLRPI  60
RCNGRSPAGS QADNIFDGAL RSFQCVSSSP EGGFSGDQLC VANIDPCQYF NSSEKDDKPD  120
AKDNGGFSDI IGNNFFSEEE TKNGGTDAAT AAENLSRSLE GPQLDDDSCS TSDGGDDVLS  180
TKKHLNHKRK RTTRSLELFV ENLIMKVMDK QEEMHRQLID MIEKNEKERI VREEAWKQRE  240
IERMRRDEEL RAQETSRSLA IISFIQNLLG HEIQISQPVE NHCTEDDGGE SSIQKELKSD  300
PSSRRWPRAE VQSLISLRTS LEHKFRATGS KGSIWEEISV EMQKVGYNRS AKKCKEKWEN  360
MNKYFKRTIG TGKASIANGK TCPYFQELDT LYRNGVVNSG AVIDSTSTEH NSQAERSIDP  420
FHEEEAFVQG ESEREHVKQE ALEMTQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	1e-59	Trihelix family protein