PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520108.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 600aa MW: 64755.5 Da PI: 7.9445

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.5e-30	258	317	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+a+d +++++tYeg+Hnh+ XP_023520108.1 258 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGSpTCPVRKQVQRCADDMSILITTYEGNHNHP 317 58************************888**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MEAAAPAFGR PRPVVKPEKP AGDSDDDRNS PSNQPLLIKK ENQGKEEHES EDKTSHSSNQ 60 KDDLSCTKIQ EEQLESARTE MGEVREENQR LKMSLGQIMK DYEALKMQFL GIVGREAKKL 120 PEHDKEQRQR PHDDQTEETE LVSLTLGRYP MAEKKKAAEE KNINGGDKEA VVKQALSLGL 180 NCKFEQESTP ATVKEANSPN RSLTNSIDHE TKEDAGETNW PPSKGLKTMR SVDDDSLPTN 240 PPKRARVCVR ARCETTTMND GCQWRKYGQK IAKGNPCPRA YYRCTGSPTC PVRKQVQRCA 300 DDMSILITTY EGNHNHPLPA SATAMASTTS AAASMLLSGS STSSAPNTTA AASSSSSSSN 360 HALSFYSNSK QNFYIPNNSS IISSTSPTHP TITLDLTSNP SSTSNPSTHF GKFPSSFPNS 420 RYPFTSQLDF GSSRNNVLSW NNGVLSYNRN NHPTTTPTNN IYQNYIQHQR NTAMSLPHQQ 480 PPLPDTIAAA TKAITADPSF QSALAAALTS IIGSGGTSAG TVKSSARGEQ PLFQLTSTAT 540 TTTNKGNGCG TSFLSNITTS ATPSNSPPTG NMAFVPASSL PFSNPKSASA SPGDHIDLTN

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MEAAAPAFGR PRPVVKPEKP AGDSDDDRNS PSNQPLLIKK ENQGKEEHES EDKTSHSSNQ  60
KDDLSCTKIQ EEQLESARTE MGEVREENQR LKMSLGQIMK DYEALKMQFL GIVGREAKKL  120
PEHDKEQRQR PHDDQTEETE LVSLTLGRYP MAEKKKAAEE KNINGGDKEA VVKQALSLGL  180
NCKFEQESTP ATVKEANSPN RSLTNSIDHE TKEDAGETNW PPSKGLKTMR SVDDDSLPTN  240
PPKRARVCVR ARCETTTMND GCQWRKYGQK IAKGNPCPRA YYRCTGSPTC PVRKQVQRCA  300
DDMSILITTY EGNHNHPLPA SATAMASTTS AAASMLLSGS STSSAPNTTA AASSSSSSSN  360
HALSFYSNSK QNFYIPNNSS IISSTSPTHP TITLDLTSNP SSTSNPSTHF GKFPSSFPNS  420
RYPFTSQLDF GSSRNNVLSW NNGVLSYNRN NHPTTTPTNN IYQNYIQHQR NTAMSLPHQQ  480
PPLPDTIAAA TKAITADPSF QSALAAALTS IIGSGGTSAG TVKSSARGEQ PLFQLTSTAT  540
TTTNKGNGCG TSFLSNITTS ATPSNSPPTG NMAFVPASSL PFSNPKSASA SPGDHIDLTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-57	WRKY family protein