PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023520045.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 173aa    MW: 18688.2 Da    PI: 8.4917
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023520045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.24.4e-46171161100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C ++Cv+apyfpa+qp+kfanvhk+FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq+++l+++la
  XP_023520045.1  17 PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLA 111
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+++e
  XP_023520045.1 112 LAQAE 116
                     99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MKTENGLRKQ GGGGAAPCAA CKLLRRRCGE ECVFAPYFPA DQPHKFANVH KVFGASNVNK  60
MLQELPLHQR GDAVSSLVYE ANARVRDPVY GCVGAISSLQ QQIDSLQTQL ALAQAEVVHL  120
RVRQTASFSN YGLSPTSPGN SGSPSSRLMG SQSSRPMFEM DMVVDQAMGD SVW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-58LBD family protein