PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519896.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 563aa MW: 62382.9 Da PI: 8.8514

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.6	4.6e-18	265	314	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++LrellP + ++K +Ka+ L +++eYI+ Lq XP_023519896.1 265 RSKHSATEQRRRSKINDRFQKLRELLPCS----DQKRDKASFLLEVIEYIQFLQ 314 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDLSQSFQ GGFLTTHDFL QPLERIEKTC 60 AKKEQTMNVS TVERAAPSLA TLARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVFP 120 VPQASNTDKS DDNSRCSSLS ASGFKLWEES AVKKGKTRKE NLSENPGLRE PPAKMEQWAV 180 STERPIQSSC SSFSSLSSSQ PSGQQKRSFG EMLKSAANVS SKEEELDDGK AFVIKKESSP 240 STAYRGDLRI NVGGKCSDQK ANTPRSKHSA TEQRRRSKIN DRFQKLRELL PCSDQKRDKA 300 SFLLEVIEYI QFLQEKVRKY ESSPPQGWYD EPAKLLPCRN NCNPARRYID QSQVAKSGPV 360 FIFAGSDQKN TSHFPAFLPR CSHNPVESNT STTFGEADHH LGSTNKATSY PMLDPRYFIP 420 VTSEGEKTKI YSQVAHSADR KPYKMQRLLC ETRACTTDIA AVDNKLKEPE QSIEGGRISI 480 SSAYSQELLK ILTQALQSSG VDMSQASIAV QIELGKRTNC RDTAANPAIV DDSARPSERA 540 VVGTRVAAAE EDMEQAFRKK QNT

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDLSQSFQ GGFLTTHDFL QPLERIEKTC  60
AKKEQTMNVS TVERAAPSLA TLARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVFP  120
VPQASNTDKS DDNSRCSSLS ASGFKLWEES AVKKGKTRKE NLSENPGLRE PPAKMEQWAV  180
STERPIQSSC SSFSSLSSSQ PSGQQKRSFG EMLKSAANVS SKEEELDDGK AFVIKKESSP  240
STAYRGDLRI NVGGKCSDQK ANTPRSKHSA TEQRRRSKIN DRFQKLRELL PCSDQKRDKA  300
SFLLEVIEYI QFLQEKVRKY ESSPPQGWYD EPAKLLPCRN NCNPARRYID QSQVAKSGPV  360
FIFAGSDQKN TSHFPAFLPR CSHNPVESNT STTFGEADHH LGSTNKATSY PMLDPRYFIP  420
VTSEGEKTKI YSQVAHSADR KPYKMQRLLC ETRACTTDIA AVDNKLKEPE QSIEGGRISI  480
SSAYSQELLK ILTQALQSSG VDMSQASIAV QIELGKRTNC RDTAANPAIV DDSARPSERA  540
VVGTRVAAAE EDMEQAFRKK QNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-89	bHLH family protein