PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519893.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 573aa MW: 63610.2 Da PI: 8.6743

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	6.9e-11	265	324	2	55
HHHHHHHHHHHHHHHHH..........HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNs..........afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN+ +f++LrellP + ++K +Ka+ L +++eYI+ Lq XP_023519893.1 265 RSKHSATEQRRRSKINDrqdftdiftcRFQKLRELLPCS----DQKRDKASFLLEVIEYIQFLQ 324 889************55555555555******9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence
MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDLSQSFQ GGFLTTHDFL QPLERIEKTC 60 AKKEQTMNVS TVERAAPSLA TLARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVFP 120 VPQASNTDKS DDNSRCSSLS ASGFKLWEES AVKKGKTRKE NLSENPGLRE PPAKMEQWAV 180 STERPIQSSC SSFSSLSSSQ PSGQQKRSFG EMLKSAANVS SKEEELDDGK AFVIKKESSP 240 STAYRGDLRI NVGGKCSDQK ANTPRSKHSA TEQRRRSKIN DRQDFTDIFT CRFQKLRELL 300 PCSDQKRDKA SFLLEVIEYI QFLQEKVRKY ESSPPQGWYD EPAKLLPCRN NCNPARRYID 360 QSQVAKSGPV FIFAGSDQKN TSHFPAFLPR CSHNPVESNT STTFGEADHH LGSTNKATSY 420 PMLDPRYFIP VTSEGEKTKI YSQVAHSADR KPYKMQRLLC ETRACTTDIA AVDNKLKEPE 480 QSIEGGRISI SSAYSQELLK ILTQALQSSG VDMSQASIAV QIELGKRTNC RDTAANPAIV 540 DDSARPSERA VVGTRVAAAE EDMEQAFRKK QNT

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence

MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDLSQSFQ GGFLTTHDFL QPLERIEKTC  60
AKKEQTMNVS TVERAAPSLA TLARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVFP  120
VPQASNTDKS DDNSRCSSLS ASGFKLWEES AVKKGKTRKE NLSENPGLRE PPAKMEQWAV  180
STERPIQSSC SSFSSLSSSQ PSGQQKRSFG EMLKSAANVS SKEEELDDGK AFVIKKESSP  240
STAYRGDLRI NVGGKCSDQK ANTPRSKHSA TEQRRRSKIN DRQDFTDIFT CRFQKLRELL  300
PCSDQKRDKA SFLLEVIEYI QFLQEKVRKY ESSPPQGWYD EPAKLLPCRN NCNPARRYID  360
QSQVAKSGPV FIFAGSDQKN TSHFPAFLPR CSHNPVESNT STTFGEADHH LGSTNKATSY  420
PMLDPRYFIP VTSEGEKTKI YSQVAHSADR KPYKMQRLLC ETRACTTDIA AVDNKLKEPE  480
QSIEGGRISI SSAYSQELLK ILTQALQSSG VDMSQASIAV QIELGKRTNC RDTAANPAIV  540
DDSARPSERA VVGTRVAAAE EDMEQAFRKK QNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	2e-86	bHLH family protein