PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023519837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 831aa MW: 91572.3 Da PI: 6.5077 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 5 | 63 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+++Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_023519837.1 5 KYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63 6789*****************************************************97 PP | |||||||
2 | START | 173.9 | 1e-54 | 153 | 360 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ +++l v s+g g+++l XP_023519837.1 153 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCVDVLSVMSTGngGTIELL 246 68999*****************************************************.8999999999************************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ sss+vRae+lpSg+li+ +++g s +++v+hvdl++++++++lr+l+ XP_023519837.1 247 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPSgppSSSFVRAEMLPSGYLIRACEDG-SLIHIVDHVDLDAWSVPEVLRPLY 340 ****************************************99999999**********************.************************ PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+ + +++++va+l++ ++ XP_023519837.1 341 ESTKILAQRRTVAALRYVRQ 360 ***************99765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 831 aa Download sequence |
MDTSKYVRYT PEQVDALERV YAECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR 60 EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSRLVY KNGYMRQQLR TASGTTTDNS 120 CESVVMSGQH HQQQNPTKHT QKDANNPAGL LAIAEETLAE FLSKATGTAV DWVQMIGMKP 180 GPDSIGIVAV SRNCNGVAAR ACGLVSLEPT KVAEILKDRL SWFRDCRCVD VLSVMSTGNG 240 GTIELLYMQT YAPTTLAAAR DFWTLRYTTS LEDGSLVICE RSLTSSTGGP SGPPSSSFVR 300 AEMLPSGYLI RACEDGSLIH IVDHVDLDAW SVPEVLRPLY ESTKILAQRR TVAALRYVRQ 360 IAHEASGEIQ LGGGRQPAVL RTFSQRLSRG FNDAVNGFVD DGWSLMDSDG VEDVTVVVNS 420 SPNKFIGSQY NQSLYPTFGG VLCAKASMLL QNVPPALLVR FLREHRSEWA DYGVDAYSAA 480 CLKSSAYAVP CARPGGFPSG QVILPLAHTV ENEEFLEVVR LEGHAMFPEE AALGGRDMYL 540 LQLCSGVDES TVGSCAQLVF APIDESFADD APLLPSGFRV IPLESKTDAS AATRTLDLAS 600 TLEVRPGSAR PGGETDATNY NLRSVLTIAF QFTFENHMRD NVAAMARQYV RTVVASVQRV 660 AMAIAPSQLG SQIGPKSLPS SPEALTLSQW ITRSYRIHTG AELFQVESQS HDAILKQLWH 720 HSDTILCCSV KTNASPVFTF ANQAGLDMLE TTLVALQDIT LDKILEDAGR KILCSEFSKI 780 MQQGFAYLPA GICISSMGRP VSYEQAIAWK VLNDDDVHHC LAFMFVNWSF M |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |