PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519678.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 408aa MW: 45399.6 Da PI: 9.9371

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_023519678.1 64 FICEICKKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	12.2	0.00055	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_023519678.1 140 WKCEKCSKKYAVQSDWKAHSKIC 162 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MMSEFDALSG LSTISNLIGQ HHPNPNPNPV LVPLKKKRNL PGTPDPDAEV IAMSPKSLMA 60 KNRFICEICK KGFQRDQNLQ LHRRGHNLPW KLRQRTSNEV RKKVYVCPEK SCVHHDPSRA 120 LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTKEYKCD CGTLFSRKDS 180 FITHRAFCDA LAEENSRIST VSTLNHHPTF INNFSPSPSS SSLIFRPNFP TTTVNHSNVI 240 SDHGGDDHKP RQLPLSPPQL PLWLDPPQNP NPFFSTAFSD HPPLFLPENQ QSFFSEPLTT 300 TSSYPPPPHM SATALLQKAS QMGPTRTPPT PPILFNNTTA VTAYGMNNSA AATAVMSDGR 360 PMMKPIMGGA KEEIGGQNLT RDFLGVGNQP VHLTPAGSNQ YSDQSRRH

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MMSEFDALSG LSTISNLIGQ HHPNPNPNPV LVPLKKKRNL PGTPDPDAEV IAMSPKSLMA  60
KNRFICEICK KGFQRDQNLQ LHRRGHNLPW KLRQRTSNEV RKKVYVCPEK SCVHHDPSRA  120
LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTKEYKCD CGTLFSRKDS  180
FITHRAFCDA LAEENSRIST VSTLNHHPTF INNFSPSPSS SSLIFRPNFP TTTVNHSNVI  240
SDHGGDDHKP RQLPLSPPQL PLWLDPPQNP NPFFSTAFSD HPPLFLPENQ QSFFSEPLTT  300
TSSYPPPPHM SATALLQKAS QMGPTRTPPT PPILFNNTTA VTAYGMNNSA AATAVMSDGR  360
PMMKPIMGGA KEEIGGQNLT RDFLGVGNQP VHLTPAGSNQ YSDQSRRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	103	KLRQRTSNEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-97	C2H2 family protein