PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519409.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 601aa MW: 65785.3 Da PI: 8.612

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	1.9e-33	265	322	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k XP_023519409.1 265 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPK 322 8**************************************.*************85 PP
2	WRKY	105.6	2.7e-33	439	497	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d+++v++tYeg+Hnh+ XP_023519409.1 439 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDQRAVITTYEGKHNHD 497 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MRLPFLEPSS SPFSFFNFLF SPFLFTISSS SSSSPLMASS SGSLDTSGNS HPSFTFSSHP 60 FMTTSYSDIL ASGIDDPPSS AAPHGSLRSS TTGVPKFKSL PPPSLPLSPP PLSPSSFFAI 120 PPGLSPAELL DSPVLLSASH PLPSPTTGSF PSQSLNWKSN YGYNQQSIKE ENKYLSNFSF 180 QTQSSKPPPS SFQPSSTTAP MNWSFQEQGK KQDGFSSENN MVKQSFSPEY GIVQNQSQIN 240 GGGQLQSDYG NNYPQQSQTV NRRSDDGYNW RKYGQKQVKG SENPRSYYKC TFPSCPTKKK 300 VERSLDGQIT EIVYKGSHNH PKPQSTRRSS LSSAGSSLSM VVSNPAANEM ADQSFTTQGS 360 AQFDGVATPE NSSISIGDDD FDRSSQKSKS VGDDYDKVEP EAKRWRREVE NNEGMSAAGS 420 RTVREPRVVV QTTSDIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTNPGC PVRKHVERAS 480 HDQRAVITTY EGKHNHDVPP ARGSGSHSLS RAFPNNDPPA TAIRPSAVAH QSNNGGHQSL 540 QTAFAVEMVQ NPNGFSFPEF GNSMGMGSGS YMNQTQPNHN LFPRAKEEPR DHDMFIQSLL 600 C

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MRLPFLEPSS SPFSFFNFLF SPFLFTISSS SSSSPLMASS SGSLDTSGNS HPSFTFSSHP  60
FMTTSYSDIL ASGIDDPPSS AAPHGSLRSS TTGVPKFKSL PPPSLPLSPP PLSPSSFFAI  120
PPGLSPAELL DSPVLLSASH PLPSPTTGSF PSQSLNWKSN YGYNQQSIKE ENKYLSNFSF  180
QTQSSKPPPS SFQPSSTTAP MNWSFQEQGK KQDGFSSENN MVKQSFSPEY GIVQNQSQIN  240
GGGQLQSDYG NNYPQQSQTV NRRSDDGYNW RKYGQKQVKG SENPRSYYKC TFPSCPTKKK  300
VERSLDGQIT EIVYKGSHNH PKPQSTRRSS LSSAGSSLSM VVSNPAANEM ADQSFTTQGS  360
AQFDGVATPE NSSISIGDDD FDRSSQKSKS VGDDYDKVEP EAKRWRREVE NNEGMSAAGS  420
RTVREPRVVV QTTSDIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTNPGC PVRKHVERAS  480
HDQRAVITTY EGKHNHDVPP ARGSGSHSLS RAFPNNDPPA TAIRPSAVAH QSNNGGHQSL  540
QTAFAVEMVQ NPNGFSFPEF GNSMGMGSGS YMNQTQPNHN LFPRAKEEPR DHDMFIQSLL  600
C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-107	WRKY family protein