PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023519123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LSD | ||||||||
Protein Properties | Length: 131aa MW: 14289.4 Da PI: 6.2157 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.7 | 1.1e-09 | 42 | 66 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lL Y GA++V+C++C tV XP_023519123.1 42 CGTCRRLLKYLKGARYVQCSCCSTV 66 ***********************99 PP | |||||||
2 | zf-LSD1 | 38 | 2.6e-12 | 80 | 104 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sVRC++C V XP_023519123.1 80 CGSCAVLLMYPYGASSVRCSSCTCV 104 **********************876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence |
MEIHEIEKDE DDGPPPGWEP ITPPLPQPPP QPLSSDMAQM VCGTCRRLLK YLKGARYVQC 60 SCCSTVNYVL EAHEVGQVKC GSCAVLLMYP YGASSVRCSS CTCVTEIGVH NRRPPWSVQQ 120 GQAAPPTNSV Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 9e-33 | LSD family protein |