PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519123.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LSD
Protein Properties Length: 131aa    MW: 14289.4 Da    PI: 6.2157
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.71.1e-094266125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg Cr lL Y  GA++V+C++C tV
  XP_023519123.1 42 CGTCRRLLKYLKGARYVQCSCCSTV 66
                    ***********************99 PP

2zf-LSD1382.6e-1280104125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+YP+GA+sVRC++C  V
  XP_023519123.1  80 CGSCAVLLMYPYGASSVRCSSCTCV 104
                     **********************876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MEIHEIEKDE DDGPPPGWEP ITPPLPQPPP QPLSSDMAQM VCGTCRRLLK YLKGARYVQC  60
SCCSTVNYVL EAHEVGQVKC GSCAVLLMYP YGASSVRCSS CTCVTEIGVH NRRPPWSVQQ  120
GQAAPPTNSV Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.19e-33LSD family protein