PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519078.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 883aa    MW: 97693.1 Da    PI: 6.3301
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++
  XP_023519078.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSMQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFI--WNEK 218
                     99*****************************9445444.38************************************************..8899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_023519078.1 219 NQLLLGIRRA 228
                     999****997 PP
2Auxin_resp118.65.2e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F++++nPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  XP_023519078.1 253 AAHAAATNSRFTIFFNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    
MRLSAAGFSP QPPEGERRVL NSELWHACAG PLVSLPAVGT RVVYFPQGHS EQVAASTNKE  60
VDAQIPNYPS LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLSAQELKEA YLPAELGSPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSM QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFFNPR ASPSEFVIPL TKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTG LPSFGIKDSD LGMNSPFMWL RGDNCLNFQG NGVSPWMQPR  420
LDTSMMAMQP DMYQAMATAA LQEMRAIDYS KIAPASVLQF QQSQGLPCQS SSLMQPQMMH  480
QSQPQQAFLQ SIQENQQHHL QPQLQPQQFN NQQQQPRQPQ PPQLDHQQIP CTIPAAISQF  540
ASCSQSQLPS LQTIPSLCQQ PSFSDSNCNP VTTTVSPLHS LAGSSSVQDE SSQLLNLQRA  600
NSIIPSAGWP AKRAAIDPLT TGASQYFLPQ GEILGTSQSS IPQNTVALPP FPGRECSNGD  660
RDDGSDPQNH VLFGVNIESS SLLMQNGASH LRGVGNDSAS TTLPFSSNYM STAGTDFSVN  720
PTMTSSNCID ESGFLQSHEN VGQVNHPPNG TFVKVHKSGT YSRSLDITKF NSYPELRSEL  780
ACMFGLEGEL EDPLRSGWQL VFVDRENDVL LLGDGPWPEF VSSVWCIKIL SPEEVHEMGK  840
RGLELLNSVP IQRLSNSTCD DYGSRQDSRN LVSGITSVGP LDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein