PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519026.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 159aa MW: 17600.2 Da PI: 8.361

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.1	6.1e-43	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv kll+++ +++r+da+ sl+y+Aear+rdPvyG+v+ i+ lq+q+++l++el+ XP_023519026.1 16 PCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELD 110 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k++ XP_023519026.1 111 AAKAR 115 99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence
MEMGSLATGT NNYYSPCAAC KFLRRKCIAG CIFAPYFPPE EPQKFANVHK VFGASNVAKL 60 LNEVLPHQRQ DAVVSLAYQA EARIRDPVYG CVAAISFLQK QVQRLQNELD AAKARLLLYS 120 CTDFSTPFSP QPQIISPPLL WNHNDIVSAN SSVYFNGGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	2e-65	LBD family protein