PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518971.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 422aa MW: 46808.4 Da PI: 8.152

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_023518971.1 60 YVCEICNQGFQRDQNLQMHRRRH 82 9*********************9 PP
2	zf-C2H2	17.4	1.3e-05	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_023518971.1 137 WVCEKCSKAYAVQSDYKAHLKTC 159 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MIANTPASAS LSLPSSEPYS CLENGSSNSN KRKRRPAGTP DPDAEVVSLS PKTLLESDRY 60 VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETPVVRKRV FVCPEPSCLH HDPCHALGDL 120 VGIKKHFRRK HSNHKQWVCE KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE 180 HQDACNMGHL RQESQTLHPA CLSRTASSPS PPSDANFTAP PTAIFLAPTD DSIINNNNNN 240 NNNSHHNLDL KLSTSTSNEG SSTQLQLSIG SCDFGDKKKR VQLLDDEKGG GRGPGGVREE 300 AREELREAMA EKAYAEEARQ QAKRQIEMAE EEFVNAKRMR QQAQAELDKA TALKQAAIKQ 360 INSTLLEITC QACQKQFQAK PTTTTTTTAP ADHDTSVAFS YVSSVITTEG EVEKDQATLI 420 PN

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MIANTPASAS LSLPSSEPYS CLENGSSNSN KRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETPVVRKRV FVCPEPSCLH HDPCHALGDL  120
VGIKKHFRRK HSNHKQWVCE KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE  180
HQDACNMGHL RQESQTLHPA CLSRTASSPS PPSDANFTAP PTAIFLAPTD DSIINNNNNN  240
NNNSHHNLDL KLSTSTSNEG SSTQLQLSIG SCDFGDKKKR VQLLDDEKGG GRGPGGVREE  300
AREELREAMA EKAYAEEARQ QAKRQIEMAE EEFVNAKRMR QQAQAELDKA TALKQAAIKQ  360
INSTLLEITC QACQKQFQAK PTTTTTTTAP ADHDTSVAFS YVSSVITTEG EVEKDQATLI  420
PN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	36	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-133	C2H2 family protein