PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023518627.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 549aa    MW: 61296.1 Da    PI: 6.5541
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023518627.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.21.9e-1251785491374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+a+++ dl++a++++  l +++s +gdp qRl ay++e+L+arl rs+s +ykal+++e s   sse +++++++++++P++kf++
  XP_023518627.1 178 LRDTLIRCAQAIHEADLNAATSFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPS---SSELMSYMSILFQICPYFKFAY 269
                     5789*****************************************************************9...99999***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                       aN  I ea+ +e  +HiiDf+i qG Q+++L++ La+Rp+gpp  lRiTgv++++s   +   l+ +g++La++A++ g+pf+f++ +a +  
  XP_023518627.1 270 TSANAFIWEAMVNEPVIHIIDFQIAQGSQYIPLIEDLANRPGGPPvLLRITGVDDSQSAhaRGGGLKIVGQKLAQLAQSKGIPFQFHA-AAMSGC 363
                     *****************************************9999789*******9988889999***********************.89999* PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++e ++Lrv++gEalaVn+ ++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++F+ rf+e+l+yy+a+f+s+++  +r++++r
  XP_023518627.1 364 KVERSDLRVRSGEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFFLRFIETLDYYTAMFESIDVARSRDDKQR 458
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     i  E+++++r+ivn+vaceg+er+erhe  +kW +r+++aGF+++p+s++++  +k llr ++++ yr+ e +g+l lgWk+r++ + SaWr
  XP_023518627.1 459 IRAEQHCVARDIVNMVACEGFERVERHELHGKWMMRMKMAGFTQYPMSSSVTGAVKNLLRDYNEN-YRLLEAEGALNLGWKNRAMATSSAWR 549
                     ***************************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    
MQASPNRQSS SVIHEMYHQS VQGMDSFYLS HFHVLENNAS PDASRQGNSV ISSSYKDQFF  60
TLESFPATAY LSACNSPSAV SVLSSRSPFS PQGSQTCSSD QHHSFDNTCG SPQSGCSVTD  120
DDYELKHKLK ELEISLLGPE TDIVDSCYCS FRGGENRDAS MARWNWNQMI ETTPRLSLRD  180
TLIRCAQAIH EADLNAATSF MDVLGQMVSV SGDPAQRLGA YLLEGLRARL ERSGSAIYKA  240
LKCEEPSSSE LMSYMSILFQ ICPYFKFAYT SANAFIWEAM VNEPVIHIID FQIAQGSQYI  300
PLIEDLANRP GGPPVLLRIT GVDDSQSAHA RGGGLKIVGQ KLAQLAQSKG IPFQFHAAAM  360
SGCKVERSDL RVRSGEALAV NFPYALHHMP DESVSTQNHR DRLLRLVKSL SPKVVTIVEQ  420
ESNTNTSPFF LRFIETLDYY TAMFESIDVA RSRDDKQRIR AEQHCVARDI VNMVACEGFE  480
RVERHELHGK WMMRMKMAGF TQYPMSSSVT GAVKNLLRDY NENYRLLEAE GALNLGWKNR  540
AMATSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein