PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023518568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GRAS | ||||||||
Protein Properties | Length: 439aa MW: 49263.4 Da PI: 6.2406 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 315 | 1.6e-96 | 43 | 436 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilk 92 +++lL++cA+a++s+d++laq++L+ l+++a+pdgd++qRla+ f++AL +r a+ + ++ +a+++ +ts++ ++++++ + l f++++P+++ XP_023518568.1 43 MEHLLVHCANAIESNDATLAQQILWVLNNIATPDGDSNQRLASAFLRALVTRAANiGSCKILAAITTAATSSSLTTQSFSLMDLaaFVDLTPWHR 137 579****************************************************5455777788877777777666666666667********* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl...v 182 f++ taN aIl+a+eg ++vH++Df++++++Q p+L++a+a+R e pp l++T+v+ +++ + ++ee+g +L +fA++ +v++e++++ + XP_023518568.1 138 FGFTTANAAILDAIEGYSAVHVVDFSLMHCMQIPTLIDAIATRFEFPPLLKLTTVVVKHTPpiLELSYEELGAKLVNFARSKNVRMEYRFVescY 232 ******************************************************9996655889999***********************98884 PP GRAS 183 akrledleleeLrvkp.......gEalaVnlvlqlhrlldesvsles.........erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 ++ +++l ++e+rv++ +Eal+ n++++lh++++e+++ + +r+ +Lk ++sl+P +v++v++ead ++++ + r+ +a+ XP_023518568.1 233 TDGFSNL-IQEIRVQNliygpesKEALILNCHMMLHYIPEETLNPNPspnfdmlssTRSMFLKEIRSLEPAIVILVDEEADFTASKMVSRLRSAF 326 4455555.555555555555599****************76654332233444445899************************************ PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 +y + +ds+++ lpr+s++r ++E+ + r+i+nv+a eg er+er e + +W +r+ ++ F+ v ++e+a++++k++l +++ g+ +++e++ XP_023518568.1 327 NYLWIPYDSMDSILPRNSKHREWYEAG-ICRKIQNVIAEEGIERVERLEPKTRWVQRMVNSKFRGVGFGEDAVSEVKTMLDEHA-AGWGLKKEDN 419 ***************************.********************************************************.99******** PP GRAS 357 slvlgWkdrpLvsvSaW 373 l+l+Wk++ +v+++aW XP_023518568.1 420 HLLLTWKGHDVVFATAW 436 ***************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence |
MNNQSPITVP RRRPWPGLFA SSSSSSSSSK ALGTWLGEDA NCMEHLLVHC ANAIESNDAT 60 LAQQILWVLN NIATPDGDSN QRLASAFLRA LVTRAANIGS CKILAAITTA ATSSSLTTQS 120 FSLMDLAAFV DLTPWHRFGF TTANAAILDA IEGYSAVHVV DFSLMHCMQI PTLIDAIATR 180 FEFPPLLKLT TVVVKHTPPI LELSYEELGA KLVNFARSKN VRMEYRFVES CYTDGFSNLI 240 QEIRVQNLIY GPESKEALIL NCHMMLHYIP EETLNPNPSP NFDMLSSTRS MFLKEIRSLE 300 PAIVILVDEE ADFTASKMVS RLRSAFNYLW IPYDSMDSIL PRNSKHREWY EAGICRKIQN 360 VIAEEGIERV ERLEPKTRWV QRMVNSKFRG VGFGEDAVSE VKTMLDEHAA GWGLKKEDNH 420 LLLTWKGHDV VFATAWVPY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-160 | GRAS family protein |