PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023518568.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 439aa    MW: 49263.4 Da    PI: 6.2406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023518568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3151.6e-96434361373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilk 92 
                     +++lL++cA+a++s+d++laq++L+ l+++a+pdgd++qRla+ f++AL +r a+  + ++ +a+++ +ts++ ++++++ + l  f++++P+++
  XP_023518568.1  43 MEHLLVHCANAIESNDATLAQQILWVLNNIATPDGDSNQRLASAFLRALVTRAANiGSCKILAAITTAATSSSLTTQSFSLMDLaaFVDLTPWHR 137
                     579****************************************************5455777788877777777666666666667********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl...v 182
                     f++ taN aIl+a+eg ++vH++Df++++++Q p+L++a+a+R e pp l++T+v+ +++    + ++ee+g +L +fA++ +v++e++++   +
  XP_023518568.1 138 FGFTTANAAILDAIEGYSAVHVVDFSLMHCMQIPTLIDAIATRFEFPPLLKLTTVVVKHTPpiLELSYEELGAKLVNFARSKNVRMEYRFVescY 232
                     ******************************************************9996655889999***********************98884 PP

            GRAS 183 akrledleleeLrvkp.......gEalaVnlvlqlhrlldesvsles.........erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                     ++ +++l ++e+rv++       +Eal+ n++++lh++++e+++ +          +r+ +Lk ++sl+P +v++v++ead ++++ + r+ +a+
  XP_023518568.1 233 TDGFSNL-IQEIRVQNliygpesKEALILNCHMMLHYIPEETLNPNPspnfdmlssTRSMFLKEIRSLEPAIVILVDEEADFTASKMVSRLRSAF 326
                     4455555.555555555555599****************76654332233444445899************************************ PP

            GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                     +y +  +ds+++ lpr+s++r ++E+  + r+i+nv+a eg er+er e + +W +r+ ++ F+ v ++e+a++++k++l +++  g+ +++e++
  XP_023518568.1 327 NYLWIPYDSMDSILPRNSKHREWYEAG-ICRKIQNVIAEEGIERVERLEPKTRWVQRMVNSKFRGVGFGEDAVSEVKTMLDEHA-AGWGLKKEDN 419
                     ***************************.********************************************************.99******** PP

            GRAS 357 slvlgWkdrpLvsvSaW 373
                      l+l+Wk++ +v+++aW
  XP_023518568.1 420 HLLLTWKGHDVVFATAW 436
                     ***************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    
MNNQSPITVP RRRPWPGLFA SSSSSSSSSK ALGTWLGEDA NCMEHLLVHC ANAIESNDAT  60
LAQQILWVLN NIATPDGDSN QRLASAFLRA LVTRAANIGS CKILAAITTA ATSSSLTTQS  120
FSLMDLAAFV DLTPWHRFGF TTANAAILDA IEGYSAVHVV DFSLMHCMQI PTLIDAIATR  180
FEFPPLLKLT TVVVKHTPPI LELSYEELGA KLVNFARSKN VRMEYRFVES CYTDGFSNLI  240
QEIRVQNLIY GPESKEALIL NCHMMLHYIP EETLNPNPSP NFDMLSSTRS MFLKEIRSLE  300
PAIVILVDEE ADFTASKMVS RLRSAFNYLW IPYDSMDSIL PRNSKHREWY EAGICRKIQN  360
VIAEEGIERV ERLEPKTRWV QRMVNSKFRG VGFGEDAVSE VKTMLDEHAA GWGLKKEDNH  420
LLLTWKGHDV VFATAWVPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-160GRAS family protein