PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023518501.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LSD
Protein Properties Length: 171aa    MW: 18021.9 Da    PI: 8.6134
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023518501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD131.23.8e-10731125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+g r +L YP GA++V+CalC+tV
  XP_023518501.1  7 CSGYRSILLYPGGATNVCCALCNTV 31
                    88889*******************9 PP

2zf-LSD1443.6e-144670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C gCrtlL+Y rGA+sVRC++C+tV
  XP_023518501.1 46 CRGCRTLLMYARGATSVRCSCCHTV 70
                    9***********************9 PP

3zf-LSD142.31.2e-1384108125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Crt+L +P+GApsV+Ca+C+ V
  XP_023518501.1  84 CGNCRTTLIFPYGAPSVKCAICHYV 108
                     **********************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MQSQLVCSGY RSILLYPGGA TNVCCALCNT VTSVPPPGTD MAQLICRGCR TLLMYARGAT  60
SVRCSCCHTV NLAPATNQVA HVNCGNCRTT LIFPYGAPSV KCAICHYVTN VGMSNVRVPI  120
PVHRRNGTIS SGMPPASSSQ SQTVVVENPM SVDESGKLVS NLVVGVTTDK R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.21e-69LSD family protein