PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023518501.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 171aa MW: 18021.9 Da PI: 8.6134 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 31.2 | 3.8e-10 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+g r +L YP GA++V+CalC+tV XP_023518501.1 7 CSGYRSILLYPGGATNVCCALCNTV 31 88889*******************9 PP | |||||||
2 | zf-LSD1 | 44 | 3.6e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y rGA+sVRC++C+tV XP_023518501.1 46 CRGCRTLLMYARGATSVRCSCCHTV 70 9***********************9 PP | |||||||
3 | zf-LSD1 | 42.3 | 1.2e-13 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L +P+GApsV+Ca+C+ V XP_023518501.1 84 CGNCRTTLIFPYGAPSVKCAICHYV 108 **********************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence |
MQSQLVCSGY RSILLYPGGA TNVCCALCNT VTSVPPPGTD MAQLICRGCR TLLMYARGAT 60 SVRCSCCHTV NLAPATNQVA HVNCGNCRTT LIFPYGAPSV KCAICHYVTN VGMSNVRVPI 120 PVHRRNGTIS SGMPPASSSQ SQTVVVENPM SVDESGKLVS NLVVGVTTDK R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.2 | 1e-69 | LSD family protein |