PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518386.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 380aa MW: 41568.9 Da PI: 10.179

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_023518386.1 53 FICEICNKGFQRDQNLQLHRRGH 75 89*******************88 PP
2	zf-C2H2	13.2	0.00026	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_023518386.1 129 WKCEKCSKKYAVQSDWKAHSKTC 151 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MSEQSSQLYH LPHNPNPNPN PNPKKKRNFP GKPDPDAEVI ALSPNALMAT NRFICEICNK 60 GFQRDQNLQL HRRGHNLPWK LRQRSNKEVK KKVYICPEKS CVHHDPARAL GDLTGIKKHF 120 SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF ITHRAFCDAL 180 ADESGRLISS VAANSTPNFI ANSLNESLFN SQGGIFVQSH HNNFPINNTF PFPQIPPSNL 240 FQTSNPILGL NKNSSKTAVN LSSFCSSGSV GGGKSIMPMS ATALLLKAAH FGSTKSNPSF 300 SGNSVGVMSS SSSSFDQSKG ELQRIGSHGG SGSGLRDFLG TREREGNGNV ELVSLLEMSK 360 FGSSMSSEMG LSEFIGNARG

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MSEQSSQLYH LPHNPNPNPN PNPKKKRNFP GKPDPDAEVI ALSPNALMAT NRFICEICNK  60
GFQRDQNLQL HRRGHNLPWK LRQRSNKEVK KKVYICPEKS CVHHDPARAL GDLTGIKKHF  120
SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF ITHRAFCDAL  180
ADESGRLISS VAANSTPNFI ANSLNESLFN SQGGIFVQSH HNNFPINNTF PFPQIPPSNL  240
FQTSNPILGL NKNSSKTAVN LSSFCSSGSV GGGKSIMPMS ATALLLKAAH FGSTKSNPSF  300
SGNSVGVMSS SSSSFDQSKG ELQRIGSHGG SGSGLRDFLG TREREGNGNV ELVSLLEMSK  360
FGSSMSSEMG LSEFIGNARG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	8e-96	C2H2 family protein