PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023518115.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 495aa    MW: 56426.7 Da    PI: 4.465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023518115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS242.32e-741254892373
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++lLl++A+av+++++ l+++l+++l +l     g +++++la +ft++L+ + ++  +  ++   + e++++  +++l+a+ +++++sP++kf+
  XP_023518115.1 125 TDLLLAAADAVDAQNHPLVSNLIQKLTNLlLCDMGsSSFNQLAWFFTQGLHYKTVG-YDIAAHE--MAEQDQTMNKNSLSAFLMLQQLSPYIKFA 216
                     689***********************99974444559******************9.3333333..333333358889999999*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taNqaIlea ege+++H+iDfdi++G+QWp+L+  La++ ++   lR+T++++ ++++++++eetg+rL++fA+++++pf+f+ +  +  +d 
  XP_023518115.1 217 HFTANQAILEASEGEKMIHVIDFDIMEGIQWPPLMADLAAK-KQVCLLRLTAIEQGNENEQRRIEETGRRLSEFAKSINLPFKFDHMGIE--KDE 308
                     ****************************************8.5669*********9999**************************97555..455 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpr..e 278
                     ++e+++v  g +++ n++  lh+l    +  +s+ +++L+ v +lsPk vv+ve+e    ++ +  sF+e f+ea++++s+l dsl   ++   e
  XP_023518115.1 309 NFEQIQVL-GQTVIANCSGILHSLS---HRNSSKLETFLNGVAKLSPKCVVLVEEElfkvSKAQPMSFVEFFFEAFHHFSSLSDSLLRCFSGvyE 399
                     66888765.889999*********8...445555679*******************65533335569*******************555443114 PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                     +  +++++++ lg +i + v++   +    ++ ++  +++++   G+k++p+s+++ +qak+l+  + +d + v++e+gsl l+Wk+rpL s++ 
  XP_023518115.1 400 NGFKQVMDEF-LGTRILESVSQFPCD----KNAMNLREKAFDYlKGYKKIPFSSFNCSQAKYLITLFRGD-FWVQHENGSLSLCWKSRPLCSATI 488
                     4666777776.**********99999....333333455666548***********************88.************************ PP

            GRAS 373 W 373
                     W
  XP_023518115.1 489 W 489
                     * PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MNTMELEPID FLTNYSYFSQ QSHEFGECSL TNSCSSLSEN SSQNSLQDGY FLEYADQNLL  60
QQELDQFDPI NYNFEEFLAT TMDHQNIPEM GDSRSVQEDE EEEEGNSKTM FKGIQAELME  120
EESLTDLLLA AADAVDAQNH PLVSNLIQKL TNLLLCDMGS SSFNQLAWFF TQGLHYKTVG  180
YDIAAHEMAE QDQTMNKNSL SAFLMLQQLS PYIKFAHFTA NQAILEASEG EKMIHVIDFD  240
IMEGIQWPPL MADLAAKKQV CLLRLTAIEQ GNENEQRRIE ETGRRLSEFA KSINLPFKFD  300
HMGIEKDENF EQIQVLGQTV IANCSGILHS LSHRNSSKLE TFLNGVAKLS PKCVVLVEEE  360
LFKVSKAQPM SFVEFFFEAF HHFSSLSDSL LRCFSGVYEN GFKQVMDEFL GTRILESVSQ  420
FPCDKNAMNL REKAFDYLKG YKKIPFSSFN CSQAKYLITL FRGDFWVQHE NGSLSLCWKS  480
RPLCSATIWV PTAKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-36GRAS family protein