PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517990.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 1699aa MW: 192787 Da PI: 4.6912

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	30	86	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR+ t+ qle+Le++F+ + yps+++r+eL++klgLt+rq ++WF+ rR k+kk XP_023517990.1 30 RPKRQMKTPFQLETLEKAFALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKK 86 579****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1699 aa Download sequence
MEAAASDGGN HNLNNDNINK ISNSSEGLSR PKRQMKTPFQ LETLEKAFAL ETYPSESTRA 60 ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRNVVPALP DSPIDELRVV AEPGSDYASG 120 SGSGSSPFGD VGLHNVASGS GGDDMLMTRR YYEPSRSIME LRAIACVESQ LGEPLREDGP 180 IIGIEFDSLP PDAFGAPLVA EQQKRSGHLY GDKYDQRDAK SNKATARAFP EYPFMPDQSR 240 IRADAYGPVA QSHYPDSLVE EQQGVAVPSP ADDNTFVPAS IRNPMVVQED SYMLPDGQVF 300 PNDVIIRMER KRKSEEARLN KEAEAHEIRM RKELEKQDNL RKKSEERMRK EMEKQDRERR 360 KEEERLQREK QREVERLKRE ERRELERREK FLQREYLRAE KRRQKEAIRK EKEAVRRKAA 420 IEKATARRIA RESMELIEDE QLELMEIAAA NKGLSSILSL DHDTLQNLES FRDYLGAFPP 480 KSVQLKKPFS IQPWINSEEN IGNLLMVWRF FITFSDVLEL WPFTLDEFVQ ALHDYDSRLL 540 GEIHICLLRL IVKDIEDVAR TPSAGLGMNQ NGVANTGGGH PQIVEGAYAW GFDICNWQKH 600 LNPLTWPEIF RQLALSAGFG PQLKRSLAWS EMRSNDEAKC GEDVVSTLRN GSAAENAFSI 660 MQEKGLLAPR RSRHRLTPGT VKFAAFHVLS LEGSQGLTVL ELAEKIQRSG LRDLSTSRTP 720 EASISVALTR DTKLFERIAP STYRVRAPYR KDPDDAEDLL SVARKKIQVF QNGFLAGEDA 780 DDVERDEESE CDDVDEDPEV DDVATTSLVN EDVSKGDANL GVENENSCHD IDGNPQNEIA 840 KNIPSSPLSG SKDTKYLNIP TEQHAAVDGT TVTDLDQENM EIDESKEGES WIQGLTEGEY 900 HDLSVEERLN ALIALTSIAN EGNSIRLVLE DRLEAANAVK KQMLAEAQID KSRLKEDIIT 960 KSDFPMHIVS KVETELNGSA MEDGQSPFPV ADNQNNETTL STAENLGSVP NERATLVPDF 1020 FPVPDNFLAQ QCGHASKRSR SQLKSYIAHR AEEMYTYRSL PLGRDRRRNR YWQFVASSSS 1080 NDPGSGRIFV EMYDGKWMLI DSEEGFDALS MALDTRGVRE SHLRIMLQMI ETSFKENVRR 1140 NLQCVNVMVQ SQITPKNEND ESSSSPDCNA SFNSPSSTVC GLNLDTTITS SSFRIELGRN 1200 ENEKKAAFRR YQDLQRWMLR ECFSTSTLCA MEFGEKRCRP LLDICDSCLC LFDSQHSHCS 1260 SCHQTYGTSE NDTNFLEHEC HCTRERKSYH WDTHALDASL PLKSRLLKAL LAFIEVHVPS 1320 EAFQLFWTEQ RKDWGVRMKL SSTIEELLQI LTLFESVIKR DFLKSDFTTT DEHLSSCSIS 1380 RNVIRDAADV GSVLTLPWIP RTSAAVALRL CEIDVSIYYI GCEKPEPDQY KEIGEHVNFP 1440 SRFVQIKNEN ELDYDGLMKQ ENLADPKSLR NSYKRGRRSR DYGRRKRWQK KVNGSKSSHV 1500 RPNVKSNEKM NEEQRELGQG MQVLGVRGRR TVRKRRAENS IPDEGLLGLV PSSSTQNIDE 1560 SPKDYIGEWE DEKMDRFVDM EDDENVMEDE ENEEDEENVN NVEPMDSDED AQEVGYEQGS 1620 WEYGIDNGTS NRWNGDLRVA SDEEDVELSE DYNGTEEGGN DFGEEELDDD TSVESDCSPN 1680 RIVGNNGGRE SPVSDDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1699 aa Download sequence

MEAAASDGGN HNLNNDNINK ISNSSEGLSR PKRQMKTPFQ LETLEKAFAL ETYPSESTRA  60
ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRNVVPALP DSPIDELRVV AEPGSDYASG  120
SGSGSSPFGD VGLHNVASGS GGDDMLMTRR YYEPSRSIME LRAIACVESQ LGEPLREDGP  180
IIGIEFDSLP PDAFGAPLVA EQQKRSGHLY GDKYDQRDAK SNKATARAFP EYPFMPDQSR  240
IRADAYGPVA QSHYPDSLVE EQQGVAVPSP ADDNTFVPAS IRNPMVVQED SYMLPDGQVF  300
PNDVIIRMER KRKSEEARLN KEAEAHEIRM RKELEKQDNL RKKSEERMRK EMEKQDRERR  360
KEEERLQREK QREVERLKRE ERRELERREK FLQREYLRAE KRRQKEAIRK EKEAVRRKAA  420
IEKATARRIA RESMELIEDE QLELMEIAAA NKGLSSILSL DHDTLQNLES FRDYLGAFPP  480
KSVQLKKPFS IQPWINSEEN IGNLLMVWRF FITFSDVLEL WPFTLDEFVQ ALHDYDSRLL  540
GEIHICLLRL IVKDIEDVAR TPSAGLGMNQ NGVANTGGGH PQIVEGAYAW GFDICNWQKH  600
LNPLTWPEIF RQLALSAGFG PQLKRSLAWS EMRSNDEAKC GEDVVSTLRN GSAAENAFSI  660
MQEKGLLAPR RSRHRLTPGT VKFAAFHVLS LEGSQGLTVL ELAEKIQRSG LRDLSTSRTP  720
EASISVALTR DTKLFERIAP STYRVRAPYR KDPDDAEDLL SVARKKIQVF QNGFLAGEDA  780
DDVERDEESE CDDVDEDPEV DDVATTSLVN EDVSKGDANL GVENENSCHD IDGNPQNEIA  840
KNIPSSPLSG SKDTKYLNIP TEQHAAVDGT TVTDLDQENM EIDESKEGES WIQGLTEGEY  900
HDLSVEERLN ALIALTSIAN EGNSIRLVLE DRLEAANAVK KQMLAEAQID KSRLKEDIIT  960
KSDFPMHIVS KVETELNGSA MEDGQSPFPV ADNQNNETTL STAENLGSVP NERATLVPDF  1020
FPVPDNFLAQ QCGHASKRSR SQLKSYIAHR AEEMYTYRSL PLGRDRRRNR YWQFVASSSS  1080
NDPGSGRIFV EMYDGKWMLI DSEEGFDALS MALDTRGVRE SHLRIMLQMI ETSFKENVRR  1140
NLQCVNVMVQ SQITPKNEND ESSSSPDCNA SFNSPSSTVC GLNLDTTITS SSFRIELGRN  1200
ENEKKAAFRR YQDLQRWMLR ECFSTSTLCA MEFGEKRCRP LLDICDSCLC LFDSQHSHCS  1260
SCHQTYGTSE NDTNFLEHEC HCTRERKSYH WDTHALDASL PLKSRLLKAL LAFIEVHVPS  1320
EAFQLFWTEQ RKDWGVRMKL SSTIEELLQI LTLFESVIKR DFLKSDFTTT DEHLSSCSIS  1380
RNVIRDAADV GSVLTLPWIP RTSAAVALRL CEIDVSIYYI GCEKPEPDQY KEIGEHVNFP  1440
SRFVQIKNEN ELDYDGLMKQ ENLADPKSLR NSYKRGRRSR DYGRRKRWQK KVNGSKSSHV  1500
RPNVKSNEKM NEEQRELGQG MQVLGVRGRR TVRKRRAENS IPDEGLLGLV PSSSTQNIDE  1560
SPKDYIGEWE DEKMDRFVDM EDDENVMEDE ENEEDEENVN NVEPMDSDED AQEVGYEQGS  1620
WEYGIDNGTS NRWNGDLRVA SDEEDVELSE DYNGTEEGGN DFGEEELDDD TSVESDCSPN  1680
RIVGNNGGRE SPVSDDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	87	RRLKDKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein