PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517989.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 1733aa MW: 196689 Da PI: 4.7533

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	30	86	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR+ t+ qle+Le++F+ + yps+++r+eL++klgLt+rq ++WF+ rR k+kk XP_023517989.1 30 RPKRQMKTPFQLETLEKAFALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKK 86 579****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1733 aa Download sequence
MEAAASDGGN HNLNNDNINK ISNSSEGLSR PKRQMKTPFQ LETLEKAFAL ETYPSESTRA 60 ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRNVVPALP DSPIDELRVV AEPGSDYASG 120 SGSGSSPFGD VGLHNVASGS GGDDMLMTRR YYEPSRSIME LRAIACVESQ LGEPLREDGP 180 IIGIEFDSLP PDAFGAPLVA EQQKRSGHLY GDKYDQRDAK SNKATARAFP EYPFMPDQSR 240 IRADAYGPVA QSHYPDSLVE VSAARTPFLL GREQLNRSHN YHGQVSRVRL LSQQEQQGVA 300 VPSPADDNTF VPASIRNPMV VQEDSYMLPD GQVFPNDVII RMERKRKSEE ARLNKEAEAH 360 EIRMRKELEK QDNLRKKSEE RMRKEMEKQD RERRKEEERL QREKQREVER LKREERRELE 420 RREKFLQREY LRAEKRRQKE AIRKEKEAVR RKAAIEKATA RRIARESMEL IEDEQLELME 480 IAAANKGLSS ILSLDHDTLQ NLESFRDYLG AFPPKSVQLK KPFSIQPWIN SEENIGNLLM 540 VWRFFITFSD VLELWPFTLD EFVQALHDYD SRLLGEIHIC LLRLIVKDIE DVARTPSAGL 600 GMNQNGVANT GGGHPQIVEG AYAWGFDICN WQKHLNPLTW PEIFRQLALS AGFGPQLKRS 660 LAWSEMRSND EAKCGEDVVS TLRNGSAAEN AFSIMQEKGL LAPRRSRHRL TPGTVKFAAF 720 HVLSLEGSQG LTVLELAEKI QRSGLRDLST SRTPEASISV ALTRDTKLFE RIAPSTYRVR 780 APYRKDPDDA EDLLSVARKK IQVFQNGFLA GEDADDVERD EESECDDVDE DPEVDDVATT 840 SLVNEDVSKG DANLGVENEN SCHDIDGNPQ NEIAKNIPSS PLSGSKDTKY LNIPTEQHAA 900 VDGTTVTDLD QENMEIDESK EGESWIQGLT EGEYHDLSVE ERLNALIALT SIANEGNSIR 960 LVLEDRLEAA NAVKKQMLAE AQIDKSRLKE DIITKSDFPM HIVSKVETEL NGSAMEDGQS 1020 PFPVADNQNN ETTLSTAENL GSVPNERATL VPDFFPVPDN FLAQQCGHAS KRSRSQLKSY 1080 IAHRAEEMYT YRSLPLGRDR RRNRYWQFVA SSSSNDPGSG RIFVEMYDGK WMLIDSEEGF 1140 DALSMALDTR GVRESHLRIM LQMIETSFKE NVRRNLQCVN VMVQSQITPK NENDESSSSP 1200 DCNASFNSPS STVCGLNLDT TITSSSFRIE LGRNENEKKA AFRRYQDLQR WMLRECFSTS 1260 TLCAMEFGEK RCRPLLDICD SCLCLFDSQH SHCSSCHQTY GTSENDTNFL EHECHCTRER 1320 KSYHWDTHAL DASLPLKSRL LKALLAFIEV HVPSEAFQLF WTEQRKDWGV RMKLSSTIEE 1380 LLQILTLFES VIKRDFLKSD FTTTDEHLSS CSISRNVIRD AADVGSVLTL PWIPRTSAAV 1440 ALRLCEIDVS IYYIGCEKPE PDQYKEIGEH VNFPSRFVQI KNENELDYDG LMKQENLADP 1500 KSLRNSYKRG RRSRDYGRRK RWQKKVNGSK SSHVRPNVKS NEKMNEEQRE LGQGMQVLGV 1560 RGRRTVRKRR AENSIPDEGL LGLVPSSSTQ NIDESPKDYI GEWEDEKMDR FVDMEDDENV 1620 MEDEENEEDE ENVNNVEPMD SDEDAQEVGY EQGSWEYGID NGTSNRWNGD LRVASDEEDV 1680 ELSEDYNGTE EGGNDFGEEE LDDDTSVESD CSPNRIVGNN GGRESPVSDD YSD

Sequence ? help Back to Top

Protein Sequence Length: 1733 aa Download sequence

MEAAASDGGN HNLNNDNINK ISNSSEGLSR PKRQMKTPFQ LETLEKAFAL ETYPSESTRA  60
ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRNVVPALP DSPIDELRVV AEPGSDYASG  120
SGSGSSPFGD VGLHNVASGS GGDDMLMTRR YYEPSRSIME LRAIACVESQ LGEPLREDGP  180
IIGIEFDSLP PDAFGAPLVA EQQKRSGHLY GDKYDQRDAK SNKATARAFP EYPFMPDQSR  240
IRADAYGPVA QSHYPDSLVE VSAARTPFLL GREQLNRSHN YHGQVSRVRL LSQQEQQGVA  300
VPSPADDNTF VPASIRNPMV VQEDSYMLPD GQVFPNDVII RMERKRKSEE ARLNKEAEAH  360
EIRMRKELEK QDNLRKKSEE RMRKEMEKQD RERRKEEERL QREKQREVER LKREERRELE  420
RREKFLQREY LRAEKRRQKE AIRKEKEAVR RKAAIEKATA RRIARESMEL IEDEQLELME  480
IAAANKGLSS ILSLDHDTLQ NLESFRDYLG AFPPKSVQLK KPFSIQPWIN SEENIGNLLM  540
VWRFFITFSD VLELWPFTLD EFVQALHDYD SRLLGEIHIC LLRLIVKDIE DVARTPSAGL  600
GMNQNGVANT GGGHPQIVEG AYAWGFDICN WQKHLNPLTW PEIFRQLALS AGFGPQLKRS  660
LAWSEMRSND EAKCGEDVVS TLRNGSAAEN AFSIMQEKGL LAPRRSRHRL TPGTVKFAAF  720
HVLSLEGSQG LTVLELAEKI QRSGLRDLST SRTPEASISV ALTRDTKLFE RIAPSTYRVR  780
APYRKDPDDA EDLLSVARKK IQVFQNGFLA GEDADDVERD EESECDDVDE DPEVDDVATT  840
SLVNEDVSKG DANLGVENEN SCHDIDGNPQ NEIAKNIPSS PLSGSKDTKY LNIPTEQHAA  900
VDGTTVTDLD QENMEIDESK EGESWIQGLT EGEYHDLSVE ERLNALIALT SIANEGNSIR  960
LVLEDRLEAA NAVKKQMLAE AQIDKSRLKE DIITKSDFPM HIVSKVETEL NGSAMEDGQS  1020
PFPVADNQNN ETTLSTAENL GSVPNERATL VPDFFPVPDN FLAQQCGHAS KRSRSQLKSY  1080
IAHRAEEMYT YRSLPLGRDR RRNRYWQFVA SSSSNDPGSG RIFVEMYDGK WMLIDSEEGF  1140
DALSMALDTR GVRESHLRIM LQMIETSFKE NVRRNLQCVN VMVQSQITPK NENDESSSSP  1200
DCNASFNSPS STVCGLNLDT TITSSSFRIE LGRNENEKKA AFRRYQDLQR WMLRECFSTS  1260
TLCAMEFGEK RCRPLLDICD SCLCLFDSQH SHCSSCHQTY GTSENDTNFL EHECHCTRER  1320
KSYHWDTHAL DASLPLKSRL LKALLAFIEV HVPSEAFQLF WTEQRKDWGV RMKLSSTIEE  1380
LLQILTLFES VIKRDFLKSD FTTTDEHLSS CSISRNVIRD AADVGSVLTL PWIPRTSAAV  1440
ALRLCEIDVS IYYIGCEKPE PDQYKEIGEH VNFPSRFVQI KNENELDYDG LMKQENLADP  1500
KSLRNSYKRG RRSRDYGRRK RWQKKVNGSK SSHVRPNVKS NEKMNEEQRE LGQGMQVLGV  1560
RGRRTVRKRR AENSIPDEGL LGLVPSSSTQ NIDESPKDYI GEWEDEKMDR FVDMEDDENV  1620
MEDEENEEDE ENVNNVEPMD SDEDAQEVGY EQGSWEYGID NGTSNRWNGD LRVASDEEDV  1680
ELSEDYNGTE EGGNDFGEEE LDDDTSVESD CSPNRIVGNN GGRESPVSDD YSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	87	RRLKDKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein