PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517960.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HSF

Protein Properties

Length: 407aa MW: 46840 Da PI: 5.5875

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.2	3e-34	15	106	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+++++++sw+ ++sf+v+++ ef++++Lpk+Fkh+nf+SF+RQLn+YgFkkv+ e+ weF+++ F+kg+ +ll++ XP_023517960.1 15 FLTKTYEMVDDPSTDSVVSWTPGNKSFIVWQPLEFSTDLLPKFFKHNNFSSFIRQLNTYGFKKVDPER---------WEFANEDFEKGRPDLLRN 100 9*******************99*************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_023517960.1 101 IHRRKP 106 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MMDEAQGSSN SLPPFLTKTY EMVDDPSTDS VVSWTPGNKS FIVWQPLEFS TDLLPKFFKH 60 NNFSSFIRQL NTYGFKKVDP ERWEFANEDF EKGRPDLLRN IHRRKPVHSH SLQNVQGQGL 120 SSPLLDLERK RFEEEVERLK HTNEKLLLES QKHEQENREL QLQMQLMKDQ FRGVQQQQQT 180 LLSIVAHALQ KPELTIYFVP ESQSHERKRR LATVAYYYNE SSAEDDPAEH AHSVSKKHMD 240 YSSTSDLNME QLDQLESSLT FWERTIHDVD QAIILPNLKS NQTKSDIQSP HISSVQLNRN 300 YQSESHVIDM NSEPVGSIAS DPIVSRKDAD ETTAIVRNGA NDVFWEQFLT ENPGSSDPPK 360 VAPEGKDSDN SKKNANKSIS FGKLWWTGNK INNLAEQMEH LTPTEKT

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MMDEAQGSSN SLPPFLTKTY EMVDDPSTDS VVSWTPGNKS FIVWQPLEFS TDLLPKFFKH  60
NNFSSFIRQL NTYGFKKVDP ERWEFANEDF EKGRPDLLRN IHRRKPVHSH SLQNVQGQGL  120
SSPLLDLERK RFEEEVERLK HTNEKLLLES QKHEQENREL QLQMQLMKDQ FRGVQQQQQT  180
LLSIVAHALQ KPELTIYFVP ESQSHERKRR LATVAYYYNE SSAEDDPAEH AHSVSKKHMD  240
YSSTSDLNME QLDQLESSLT FWERTIHDVD QAIILPNLKS NQTKSDIQSP HISSVQLNRN  300
YQSESHVIDM NSEPVGSIAS DPIVSRKDAD ETTAIVRNGA NDVFWEQFLT ENPGSSDPPK  360
VAPEGKDSDN SKKNANKSIS FGKLWWTGNK INNLAEQMEH LTPTEKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	211	ERKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	4e-96	HSF family protein