PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517750.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 379aa MW: 42163.7 Da PI: 6.1146

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.8	2.4e-07	153	174	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_023517750.1 153 FCEICGKGFKRDANLRMHMRAH 174 6*******************99 PP
2	zf-C2H2	11.3	0.0011	272	287	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L H+ XP_023517750.1 272 CGTTFSRKDKLFGHMA 287 **************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MNPPTFPMEF SGDPLSTNLT GSDDPRIPLQ NLSTISSRMD AVQIFLSENI DREIRISNQQ 60 MDAVSSEIAS AIQQIVVNGA ALLALAQVKT SNTPGLKAST SRTHSIPVTE KSMAELKVEG 120 VDEITRIESE EFEMDCEIVE MDAMELLAEH IHFCEICGKG FKRDANLRMH MRAHGNQFKT 180 PEALAKPLDG VVVDHKAKRT RFSCPYDGCV RNKTHNKFRP LKSLICVKNH FKRSHCPKMF 240 CCNRCNKKSF SVMADLKSHL KHCGESKWRC SCGTTFSRKD KLFGHMALFE GHMPAVADDD 300 GKGKATAAEA AATPEMDEDG DSNRISKDVN FPDAWNSPDD GSFESFLDGF GSIENHCLQE 360 VLGFPHGFDS ESEWKFCSD

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MNPPTFPMEF SGDPLSTNLT GSDDPRIPLQ NLSTISSRMD AVQIFLSENI DREIRISNQQ  60
MDAVSSEIAS AIQQIVVNGA ALLALAQVKT SNTPGLKAST SRTHSIPVTE KSMAELKVEG  120
VDEITRIESE EFEMDCEIVE MDAMELLAEH IHFCEICGKG FKRDANLRMH MRAHGNQFKT  180
PEALAKPLDG VVVDHKAKRT RFSCPYDGCV RNKTHNKFRP LKSLICVKNH FKRSHCPKMF  240
CCNRCNKKSF SVMADLKSHL KHCGESKWRC SCGTTFSRKD KLFGHMALFE GHMPAVADDD  300
GKGKATAAEA AATPEMDEDG DSNRISKDVN FPDAWNSPDD GSFESFLDGF GSIENHCLQE  360
VLGFPHGFDS ESEWKFCSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-75	C2H2 family protein