PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517636.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 859aa MW: 95447.4 Da PI: 8.7245

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.7e-07	280	299	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ GtC+ G +Ck++H XP_023517636.1 280 ICNFFAA-GTCRNGKNCKYSH 299 89999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence
MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMEI TNTVSKSKKD WGLLSKEPLS 60 ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRGRS 120 RSRSWSRSRS RSRTPPRSFK RDSGFHDRNR NRTRVSTQLC RDFASGRCRR GGGCPFLHAE 180 NQNLDDSWDS RNKKGGRSLR STPHDFRDYS RSGRSAAPCT DFVKGRCHRG ESCKYPHDSG 240 FHELSRGSSN DISRDRENDR SKEAYLSRGE REPSSSSLVI CNFFAAGTCR NGKNCKYSHQ 300 SQPCASLERK SSADGWEQVE CSDGRERLWD GSKSNELASG SDFTQLREEK NKQIASQESR 360 YTWPSELKGG HGLNNESKIQ WDQAASIKAV QNSKNDTILS KPEDAGGCIG TSDSRGHRKW 420 PSDDMEMSPD WHFPVQPSNH VVKGDCNIIL DSGSQTSMAL ATLSHAIVQE ALAKKQDVTI 480 EPLTVDNTHF RQNHNLTKDV TMASAFNDKI TIDKTIASHA EGNPSGNIVL GQKMAYHTNH 540 PGGSVLNPNV VDGIFRVKPR EDDRSMPGIN PVTTITPNMV TSEQITQLTN LSVSLAQYFG 600 NVQPLPQLYA SLSTHNVSEI PSFPYSDAPV GALGTLMKTS PIIECSKQHD STVCNSLEVK 660 KLEATKIPSD SLLNFTGQKS MTDAKDEVQI PIFPLSSDPS NKIVISAKET PNESDAINHG 720 KRAAEGEANN KKNGDGDNEN RTEAGANEDS EENDTTENAN GNDGVHDKKK GKDTKGIRAF 780 KFALVEFIKE LLKPTWKEGH ISKDVYKTIV KKVVDKVTGT LQGGHIPQTQ EKIDQYLSFS 840 KSKLTKLVQA YVDRVQKTS

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence

MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMEI TNTVSKSKKD WGLLSKEPLS  60
ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRGRS  120
RSRSWSRSRS RSRTPPRSFK RDSGFHDRNR NRTRVSTQLC RDFASGRCRR GGGCPFLHAE  180
NQNLDDSWDS RNKKGGRSLR STPHDFRDYS RSGRSAAPCT DFVKGRCHRG ESCKYPHDSG  240
FHELSRGSSN DISRDRENDR SKEAYLSRGE REPSSSSLVI CNFFAAGTCR NGKNCKYSHQ  300
SQPCASLERK SSADGWEQVE CSDGRERLWD GSKSNELASG SDFTQLREEK NKQIASQESR  360
YTWPSELKGG HGLNNESKIQ WDQAASIKAV QNSKNDTILS KPEDAGGCIG TSDSRGHRKW  420
PSDDMEMSPD WHFPVQPSNH VVKGDCNIIL DSGSQTSMAL ATLSHAIVQE ALAKKQDVTI  480
EPLTVDNTHF RQNHNLTKDV TMASAFNDKI TIDKTIASHA EGNPSGNIVL GQKMAYHTNH  540
PGGSVLNPNV VDGIFRVKPR EDDRSMPGIN PVTTITPNMV TSEQITQLTN LSVSLAQYFG  600
NVQPLPQLYA SLSTHNVSEI PSFPYSDAPV GALGTLMKTS PIIECSKQHD STVCNSLEVK  660
KLEATKIPSD SLLNFTGQKS MTDAKDEVQI PIFPLSSDPS NKIVISAKET PNESDAINHG  720
KRAAEGEANN KKNGDGDNEN RTEAGANEDS EENDTTENAN GNDGVHDKKK GKDTKGIRAF  780
KFALVEFIKE LLKPTWKEGH ISKDVYKTIV KKVVDKVTGT LQGGHIPQTQ EKIDQYLSFS  840
KSKLTKLVQA YVDRVQKTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-11	C3H family protein