PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023517635.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 862aa MW: 95789.8 Da PI: 8.8103 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.7e-07 | 283 | 302 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ GtC+ G +Ck++H XP_023517635.1 283 ICNFFAA-GTCRNGKNCKYSH 302 8**9999.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 862 aa Download sequence |
MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMEI TNTVSKSKKD WGLLSKEPLS 60 ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRSVR 120 GRSRSRSWSR SRSRSRTPPR SFKRDSGFHD RNRNRTRVST QLCRDFASGR CRRGGGCPFL 180 HAENQNLDDS WDSRNKKGGR SLRSTPHDFR DYSRSGRSAA PCTDFVKGRC HRGESCKYPH 240 DSGFHELSRG SSNDISRDRE NDRSKEAYLS RGEREPSSSS LVICNFFAAG TCRNGKNCKY 300 SHQSQPCASL ERKSSADGWE QVECSDGRER LWDGSKSNEL ASGSDFTQLR EEKNKQIASQ 360 ESRYTWPSEL KGGHGLNNES KIQWDQAASI KAVQNSKNDT ILSKPEDAGG CIGTSDSRGH 420 RKWPSDDMEM SPDWHFPVQP SNHVVKGDCN IILDSGSQTS MALATLSHAI VQEALAKKQD 480 VTIEPLTVDN THFRQNHNLT KDVTMASAFN DKITIDKTIA SHAEGNPSGN IVLGQKMAYH 540 TNHPGGSVLN PNVVDGIFRV KPREDDRSMP GINPVTTITP NMVTSEQITQ LTNLSVSLAQ 600 YFGNVQPLPQ LYASLSTHNV SEIPSFPYSD APVGALGTLM KTSPIIECSK QHDSTVCNSL 660 EVKKLEATKI PSDSLLNFTG QKSMTDAKDE VQIPIFPLSS DPSNKIVISA KETPNESDAI 720 NHGKRAAEGE ANNKKNGDGD NENRTEAGAN EDSEENDTTE NANGNDGVHD KKKGKDTKGI 780 RAFKFALVEF IKELLKPTWK EGHISKDVYK TIVKKVVDKV TGTLQGGHIP QTQEKIDQYL 840 SFSKSKLTKL VQAYVDRVQK TS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-11 | C3H family protein |