PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023517614.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 588aa    MW: 65220.6 Da    PI: 4.7255
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023517614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3703.2e-1132205882374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+ecA+ +s+++ ++a ++  +l+e +s++gdp++R+a+yf+eAL +rl+    ++ + l +se++   s++ + ++k++++++P+ kf+hl
  XP_023517614.1 220 LKTLIECAR-LSESEPNRAAQIFIQLKESSSEHGDPTERVAFYFLEALYRRLSL---QTENRLVCSEST---SDDFTISYKALNDACPYSKFAHL 307
                     689******.566688899999*******************************9...899999***999...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIle +e+++++HiiDf+isqG+QW+aLlqaLa+R++g+p  +Ri g+ +p  g   +++l +tg+rLa+fA+ l+++fef+  + + +e+
  XP_023517614.1 308 TANQAILEMTENASKIHIIDFGISQGVQWAALLQALATRSSGKPtGIRISGIPAPMLGncPATALFATGNRLAEFAKLLELNFEFDR-ILTPIEE 401
                     ****************************************887769********9999999**************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++r++++E+laVn++lql++llde+  +     +vL+l ksl+P++v++ e ea++n+  F++rf +a++yysa+f+sl+ klpr+s+er 
  XP_023517614.1 402 LKESSFRIDSDETLAVNFMLQLYNLLDETPRVVL---NVLRLAKSLNPRIVTLGEYEANLNRVGFFNRFKNAVRYYSAVFESLDPKLPRNSNERL 493
                     ***************************9999999...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                      +E+ +lgr+i ++v  e +   ++er+e +e+W++++ ++GF++v+ls++a +qa+ ll k++ s +y++ e+s  ++ l W++ p+++vS+Wr
  XP_023517614.1 494 QLEKLVLGRQIGDIVGPESSPgaKIERMEDKEQWKMMMVNCGFEAVNLSHYAKSQAQILLWKYDySCEYSLIESSPGFLsLAWNQVPIITVSSWR 588
                     ****************99886669****************************************9999*99999888888**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    
MANMCADSGN LMAIAQQVMK QKQQQEQQQQ QPPQQPPPQQ LTSPSTFTLN PWSGSNHGLS  60
SPDLGFGLAG AGFSDPFQVQ RVVDGGETSF QFPNLEHHSS SFRYPDFDSD EWMDSLMAGG  120
DSTDSSNLPS GCDAWQANSD IALYGDDPFV PCPSRLTIPC SSPSDLNRVI FPEPPRNQAA  180
IQPPVVSWTG LTAKTPPVVV KDTNGCSSSS AENEPKPPLL KTLIECARLS ESEPNRAAQI  240
FIQLKESSSE HGDPTERVAF YFLEALYRRL SLQTENRLVC SESTSDDFTI SYKALNDACP  300
YSKFAHLTAN QAILEMTENA SKIHIIDFGI SQGVQWAALL QALATRSSGK PTGIRISGIP  360
APMLGNCPAT ALFATGNRLA EFAKLLELNF EFDRILTPIE ELKESSFRID SDETLAVNFM  420
LQLYNLLDET PRVVLNVLRL AKSLNPRIVT LGEYEANLNR VGFFNRFKNA VRYYSAVFES  480
LDPKLPRNSN ERLQLEKLVL GRQIGDIVGP ESSPGAKIER MEDKEQWKMM MVNCGFEAVN  540
LSHYAKSQAQ ILLWKYDYSC EYSLIESSPG FLSLAWNQVP IITVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein