PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023517609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GRAS | ||||||||
Protein Properties | Length: 600aa MW: 66717.4 Da PI: 4.7794 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 369.9 | 3.4e-113 | 232 | 600 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++L+ecA+ +s+++ ++a ++ +l+e +s++gdp++R+a+yf+eAL +rl+ ++ + l +se++ s++ + ++k++++++P+ kf+hl XP_023517609.1 232 LKTLIECAR-LSESEPNRAAQIFIQLKESSSEHGDPTERVAFYFLEALYRRLSL---QTENRLVCSEST---SDDFTISYKALNDACPYSKFAHL 319 689******.566688899999*******************************9...899999***999...99********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 taNqaIle +e+++++HiiDf+isqG+QW+aLlqaLa+R++g+p +Ri g+ +p g +++l +tg+rLa+fA+ l+++fef+ + + +e+ XP_023517609.1 320 TANQAILEMTENASKIHIIDFGISQGVQWAALLQALATRSSGKPtGIRISGIPAPMLGncPATALFATGNRLAEFAKLLELNFEFDR-ILTPIEE 413 ****************************************887769********9999999**************************.799**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 l+ +++r++++E+laVn++lql++llde+ + +vL+l ksl+P++v++ e ea++n+ F++rf +a++yysa+f+sl+ klpr+s+er XP_023517609.1 414 LKESSFRIDSDETLAVNFMLQLYNLLDETPRVVL---NVLRLAKSLNPRIVTLGEYEANLNRVGFFNRFKNAVRYYSAVFESLDPKLPRNSNERL 505 ***************************9999999...9********************************************************* PP GRAS 284 kvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 +E+ +lgr+i ++v e + ++er+e +e+W++++ ++GF++v+ls++a +qa+ ll k++ s +y++ e+s ++ l W++ p+++vS+Wr XP_023517609.1 506 QLEKLVLGRQIGDIVGPESSPgaKIERMEDKEQWKMMMVNCGFEAVNLSHYAKSQAQILLWKYDySCEYSLIESSPGFLsLAWNQVPIITVSSWR 600 ****************99886669****************************************9999*99999888888**************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence |
MFVTRDFLSG WRMANMCADS GNLMAIAQQV MKQKQQQEQQ QQQPPQQPPP QQLTSPSTFT 60 LNPWSGSNHG LSSPDLGFGL AGAGFSDPFQ VQRVVDGGET SFQFPNLEHH SSSFRYPDFD 120 SDEWMDSLMA GGDSTDSSNL PSGCDAWQAN SDIALYGDDP FVPCPSRLTI PCSSPSDLNR 180 VIFPEPPRNQ AAIQPPVVSW TGLTAKTPPV VVKDTNGCSS SSAENEPKPP LLKTLIECAR 240 LSESEPNRAA QIFIQLKESS SEHGDPTERV AFYFLEALYR RLSLQTENRL VCSESTSDDF 300 TISYKALNDA CPYSKFAHLT ANQAILEMTE NASKIHIIDF GISQGVQWAA LLQALATRSS 360 GKPTGIRISG IPAPMLGNCP ATALFATGNR LAEFAKLLEL NFEFDRILTP IEELKESSFR 420 IDSDETLAVN FMLQLYNLLD ETPRVVLNVL RLAKSLNPRI VTLGEYEANL NRVGFFNRFK 480 NAVRYYSAVF ESLDPKLPRN SNERLQLEKL VLGRQIGDIV GPESSPGAKI ERMEDKEQWK 540 MMMVNCGFEA VNLSHYAKSQ AQILLWKYDY SCEYSLIESS PGFLSLAWNQ VPIITVSSWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 0.0 | GRAS family protein |