PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517588.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 679aa MW: 75168 Da PI: 7.1246

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.4	1.4e-23	120	221	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_023517588.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 210 89**************************996555555..89*******************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_023517588.1 211 NGDLCVGIRRA 221 8999**997 PP
2	Auxin_resp	109.2	4.3e-36	277	360	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fe+vY+Prast+eF+vk+ v++al+++++ GmRfkmafeteds ++++ +Gt+ v+++dp+rWp+S+Wr+L+ XP_023517588.1 277 AATLAANGQPFEIVYYPRASTPEFCVKAGLVKAALQIRWCSGMRFKMAFETEDSLRISWfMGTINTVQAADPLRWPESPWRLLQ 360 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MITFMDSKEK VKEMEKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH ACAPVDFRNC 60 SKVPPYTLCR VSAIKFLADP DTDEVFAKLR LIPINGSELE FEDDGIGRLN GSEQDKPTSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGDGPE PPCGWNPAGG 240 NCAVPYGAFS TFLREDENRV NRTNGKGKVK AESVIEAATL AANGQPFEIV YYPRASTPEF 300 CVKAGLVKAA LQIRWCSGMR FKMAFETEDS LRISWFMGTI NTVQAADPLR WPESPWRLLQ 360 VTWDEPDLLQ NVKRVSPWLV ELVSNISPIH LAPFSPPRKK FRYPQHPDFP HDNQPSMSPF 420 ASYLHGPGSP FGCPPDNNPA GMQGARHAHF GLSLSDFHLS KLQSGLFPIR YRSLDPAAGS 480 TRLSGNAMTE KPSMSENVSC LLTMAHSTQT SKKFDNVKTP QLILFGRPIL TELQMSQSCS 540 GDTVSPVGTG NSSSDGNGSG SALHQQGLPE RSSCENFQWY KDNRQDVEPN LDTGHCKVFM 600 ESEDVGRTLD LSSLGSYEEL YRKLGNMFGI DNSEMLNHVL YRDISGAVKH VGDEQFSEFM 660 KTARRLTILT DSGSNNVGG

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MITFMDSKEK VKEMEKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH ACAPVDFRNC  60
SKVPPYTLCR VSAIKFLADP DTDEVFAKLR LIPINGSELE FEDDGIGRLN GSEQDKPTSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP  180
RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGDGPE PPCGWNPAGG  240
NCAVPYGAFS TFLREDENRV NRTNGKGKVK AESVIEAATL AANGQPFEIV YYPRASTPEF  300
CVKAGLVKAA LQIRWCSGMR FKMAFETEDS LRISWFMGTI NTVQAADPLR WPESPWRLLQ  360
VTWDEPDLLQ NVKRVSPWLV ELVSNISPIH LAPFSPPRKK FRYPQHPDFP HDNQPSMSPF  420
ASYLHGPGSP FGCPPDNNPA GMQGARHAHF GLSLSDFHLS KLQSGLFPIR YRSLDPAAGS  480
TRLSGNAMTE KPSMSENVSC LLTMAHSTQT SKKFDNVKTP QLILFGRPIL TELQMSQSCS  540
GDTVSPVGTG NSSSDGNGSG SALHQQGLPE RSSCENFQWY KDNRQDVEPN LDTGHCKVFM  600
ESEDVGRTLD LSSLGSYEEL YRKLGNMFGI DNSEMLNHVL YRDISGAVKH VGDEQFSEFM  660
KTARRLTILT DSGSNNVGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein