PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023517437.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 851aa    MW: 92257.5 Da    PI: 6.4149
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023517437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.19.3e-1294778362374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alpp+  ++++s++ ++a+++f+ +sP++kfsh+
  XP_023517437.1 477 LTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPTLLPHTHSQKIASAFQVFNGISPFVKFSHF 571
                     579******************************************************************************************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s+e le+tg+rL++fAe+lg+pf+f + va+++ +l+l
  XP_023517437.1 572 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SQEVLEATGKRLTEFAEKLGLPFDFFP-VADKIGNLDL 661
                     *****************************************************....9**************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV+++   h+l++ ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++eseer+ vE
  XP_023517437.1 662 ERLNVSQREAVAVHWMQ--HSLYEVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-TGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVE 749
                     ****************9..999988888888....**********************.889********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaW+
  XP_023517437.1 750 QLLLSREIRNVLAVGGPSRSGEVK-FQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWK 836
                     ******************888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MATYALLGDS TVRVNGGFDD GSLTSNSTNS NGSEELNQQT VQVPVQVSQP PPRLPPGKMV  60
RKRIASEIEI EELDGGGGGT AAVHPRFCRR SLASDRPFAG GENKTNENVD NYCSSSNPSH  120
GANHSTVHNL TALTSVVVAG SNLSNPPSGS DATASSTTSN VSSLIDSTLP VLRPQPHHRH  180
LQNPAVCGFS GLPLFPPESN HHHHHNKLNS RNNPFPIPNP CQVVLHNPPT STTTSIIAAA  240
STPMDDSSAT AWIDGIIKDL IHSSTAVSIP QLIQNVRDII YPCNPNLANL LEFRLRTLTE  300
PNVPNFAAED QRVRKSPLPS PAPVGGSGLQ QRQFNQEHEQ EQDCSGLKLN LDSSLHNLPN  360
FSSQPPFHDP YLHWGATPTP APTPSVATTG GEVPGHQLNL SSVPHSSLIP LNHIPSKPQP  420
EQPNSCPVNV KAAAAAAAQP SPSPPTSNDP STTALLIREI KEEMRQQKRD EEGLHLLTLL  480
LQCAEAVSAD NLEEANKMLL EISELSTPFG TSAQRVAAYF SEAMSARLVS SCLGIYAALP  540
PTLLPHTHSQ KIASAFQVFN GISPFVKFSH FTANQAIQEA FEREERVHII DLDIMQGLQW  600
PGLFHILASR PGGPPYVRLT GLGTSQEVLE ATGKRLTEFA EKLGLPFDFF PVADKIGNLD  660
LERLNVSQRE AVAVHWMQHS LYEVTGSDSN TLWLLQRLAP KVVTVVEQDL SHTGSFLGRF  720
VEAIHYYSAL FDSLGVSYGE ESEERHLVEQ LLLSREIRNV LAVGGPSRSG EVKFQNWREK  780
LQQSGFKGIS LAGNAATQAT LLLGMFPSDG YTLVEDNGTL KLGWKDLCLL TASAWKPPFH  840
HHAAGNHIPR Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein