PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517415.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 772aa MW: 84956.6 Da PI: 6.9162

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.8e-07	223	243	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+f+a+ G+C G++C+F H XP_023517415.1 223 AICDFYAK-GWCIKGSSCSFLH 243 68****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence
MRGIFVELGS RGYAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTESS EVKKLSSVGG 60 TESNGNIEFA RLSGEPLTKL VEQSHGECTK VESRKCPKDK ETEDQELTVG DKDVEALRNN 120 LPKDSGGSIY NSKVPLCNRG IISAKVSNGL SVTVEDSDIG LENHLVGGNL GSTNPEREST 180 QMDLQLENGK NQMASRSAAS KKRTRKLSHG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS 240 FLHIKDNAIG SDQHSEEHAG AAYLKRQVQP NQAGLQYSAD ASKSPVFHHL PNSSFLKDSS 300 LSLKFGISSE RTLPRDFTES KGWDVLHEKN KFLLHQREDS LLSELPDCQK LPSTSFDVSF 360 PLNREGSTAR NEQPPEFGPS SGGFAKLSVM EEPANVACPR LLNDYHSPVL RSSLNSNTTL 420 TKGGILSSRF TTSNDSFPFT PSSSASFFGA QKMSIIDGEH RVSMPASSFM RSSPFSPSES 480 DNSLINASMN SSDYKTKYSC DDWEPSEPFR PSFFIPSINT ASQYDPFLDS IELPRKVGGC 540 HNVSLDRQGH EEVSPLSTLH RASGNFMVPG SSKPELNDDT SSLSSHNKAE DKNEKAGHVE 600 GTDSLMFEAE IQGSSGIDGC NGSRTREDDH MGLSREKNVP KKMKTDTDGE IKLSNIAFHE 660 KESEAESDRQ LGDMDGKHLI DGNVHKESKA TRHFRSALIE LVKGILRPKW REGHLKKDVH 720 NTVVKKTLDK VLGTLQPFQV PTTVESVKQY LSSSRPKIEK LVEGYVSKYG KS

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence

MRGIFVELGS RGYAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTESS EVKKLSSVGG  60
TESNGNIEFA RLSGEPLTKL VEQSHGECTK VESRKCPKDK ETEDQELTVG DKDVEALRNN  120
LPKDSGGSIY NSKVPLCNRG IISAKVSNGL SVTVEDSDIG LENHLVGGNL GSTNPEREST  180
QMDLQLENGK NQMASRSAAS KKRTRKLSHG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS  240
FLHIKDNAIG SDQHSEEHAG AAYLKRQVQP NQAGLQYSAD ASKSPVFHHL PNSSFLKDSS  300
LSLKFGISSE RTLPRDFTES KGWDVLHEKN KFLLHQREDS LLSELPDCQK LPSTSFDVSF  360
PLNREGSTAR NEQPPEFGPS SGGFAKLSVM EEPANVACPR LLNDYHSPVL RSSLNSNTTL  420
TKGGILSSRF TTSNDSFPFT PSSSASFFGA QKMSIIDGEH RVSMPASSFM RSSPFSPSES  480
DNSLINASMN SSDYKTKYSC DDWEPSEPFR PSFFIPSINT ASQYDPFLDS IELPRKVGGC  540
HNVSLDRQGH EEVSPLSTLH RASGNFMVPG SSKPELNDDT SSLSSHNKAE DKNEKAGHVE  600
GTDSLMFEAE IQGSSGIDGC NGSRTREDDH MGLSREKNVP KKMKTDTDGE IKLSNIAFHE  660
KESEAESDRQ LGDMDGKHLI DGNVHKESKA TRHFRSALIE LVKGILRPKW REGHLKKDVH  720
NTVVKKTLDK VLGTLQPFQV PTTVESVKQY LSSSRPKIEK LVEGYVSKYG KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-33	C3H family protein