PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023517414.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 492aa    MW: 55650.4 Da    PI: 4.9348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023517414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.81.2e-1041134914374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                      Lle A+a+s+++ +++q+l++ l+el+sp+gd+ q+laayf++AL +r+++s+++ y+al++ ++++ + +++ +++  f+evsP+ +f+h+ +
  XP_023517414.1 113 ILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKTCSFESTRKMMLKFQEVSPWTTFGHVSC 207
                     79***********************************************************8888876665555566666*************** PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvak.r 185
                     N a+ ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v+  ++g       s++ ++e+g r++kfA+ +gvpf+f++l+++ +
  XP_023517414.1 208 NGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGdgsgvaaSQKVMKEIGTRMEKFARLMGVPFKFHTLYHSgD 302
                     *************************************************998888999********************************7777* PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklp 276
                     l+dl+l +L++k++EalaVn++ +l ++     +++++rd ++  ++sl+P++++v+e+ead++ +    +Fl +f e+l+++ + f++l++++ 
  XP_023517414.1 303 LSDLDLAKLDIKEDEALAVNCIGALRSVA----AVDNRRDFLIASFRSLRPRIITVIEEEADLDVGvdgiEFLSGFQECLRWFRVYFETLDESFT 393
                     *************************9997....88888999*******************9986555666************************* PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                     r+s+er ++Er+  gr+iv++vac+ ae++er+e++++W +rl+ +GF+p+ +s+++ +++++llr++k ++ ++  ++ + ++l+Wk++p+v++
  XP_023517414.1 394 RTSNERLMLERA-AGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKeGWAMTQSSDVAGIFLTWKEQPVVWA 487
                     ************.********************************************************555555557778889*********** PP

            GRAS 371 SaWr 374
                     SaW+
  XP_023517414.1 488 SAWK 491
                     ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MDTLFRLVNL QSEQSYNSSR SRTNSSSSRS SRQNQYHYHQ QEDEECYNVL MDEEDFSSSS  60
NSRQYYNPYL PNPSSTVSTT PTATTPTPID QFSFVSPAPD FNFEFSGRWA PDILLETARA  120
ISDRNSARVQ QLMWMLNELS SPYGDTDQKL AAYFLQALFT RMTDSGDRNY RALSSASEKT  180
CSFESTRKMM LKFQEVSPWT TFGHVSCNGA LIEALEGESK LHIIDISNTY CTQWPTLLEA  240
LATRTDDTPH LRLTTVVITK PGDGSGVAAS QKVMKEIGTR MEKFARLMGV PFKFHTLYHS  300
GDLSDLDLAK LDIKEDEALA VNCIGALRSV AAVDNRRDFL IASFRSLRPR IITVIEEEAD  360
LDVGVDGIEF LSGFQECLRW FRVYFETLDE SFTRTSNERL MLERAAGRAI VDLVACSAAE  420
SVERRESAAR WAQRLHGSGF SPLIFSDEVC DDVRALLRRY KEGWAMTQSS DVAGIFLTWK  480
EQPVVWASAW KP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein