PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517410.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 485aa MW: 52707.1 Da PI: 8.8274

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	441	462	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f C+ G+ C+F+H+ XP_023517410.1 441 NCIYFNTPKGCRNGNDCQFNHD 462 8********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MKRTRKSKGV SWANGVNLCQ VKLFSSEDCP SKVGQSSNHL QAKTSRRLPP YTYESNGCPP 60 GFNVTCLKNQ LADVSSIPLI KWNCPPKFAM SCHWCVAAGE ESKELESQSF REMRLLEAVY 120 PRVSDIPPGA TVSTEIKNER YNDSVTPLVP IIPIEEEECE VMEADSAAVG NSAMKSFRMM 180 SSNIQLEPAI SKSSIETSAA AAAASGEMHT EKLPDVGVDV AAAASAALAV LMKSMEQGSM 240 IDTNLLIKIF NDTTMIQNLT TILPLYEAAY GSPPSAAIAA PISLSKPVTA SNSLPVPKSD 300 TIQKLPNRSL PHGSVGVPSS VTTLPQVSNI VASGVKPAAV PVRGQTEPQT VKTTIPNARN 360 YSNTGAAPGQ VNMGPVSLVR TEGQQLKDLN YYKNLVRQHG EQKKDGKEQK FELNGNNHNQ 420 QYPNMVHEMK AGNLKGKIKK NCIYFNTPKG CRNGNDCQFN HDMSNPWRIN SVLETQNSKR 480 MKLWG

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MKRTRKSKGV SWANGVNLCQ VKLFSSEDCP SKVGQSSNHL QAKTSRRLPP YTYESNGCPP  60
GFNVTCLKNQ LADVSSIPLI KWNCPPKFAM SCHWCVAAGE ESKELESQSF REMRLLEAVY  120
PRVSDIPPGA TVSTEIKNER YNDSVTPLVP IIPIEEEECE VMEADSAAVG NSAMKSFRMM  180
SSNIQLEPAI SKSSIETSAA AAAASGEMHT EKLPDVGVDV AAAASAALAV LMKSMEQGSM  240
IDTNLLIKIF NDTTMIQNLT TILPLYEAAY GSPPSAAIAA PISLSKPVTA SNSLPVPKSD  300
TIQKLPNRSL PHGSVGVPSS VTTLPQVSNI VASGVKPAAV PVRGQTEPQT VKTTIPNARN  360
YSNTGAAPGQ VNMGPVSLVR TEGQQLKDLN YYKNLVRQHG EQKKDGKEQK FELNGNNHNQ  420
QYPNMVHEMK AGNLKGKIKK NCIYFNTPKG CRNGNDCQFN HDMSNPWRIN SVLETQNSKR  480
MKLWG