PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023517365.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 294aa MW: 31045.3 Da PI: 9.6281 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.4e-07 | 34 | 58 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H XP_023517365.1 34 KSKPCTKFFSTAGCPFGESCHFLHH 58 7789********************6 PP | |||||||
2 | zf-CCCH | 27.5 | 5.5e-09 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f Ck+Gd+C+FaHg+ XP_023517365.1 101 KTRMCNKFNTAEGCKFGDKCNFAHGE 126 89**********************96 PP | |||||||
3 | zf-CCCH | 35.2 | 2.1e-11 | 261 | 285 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C++fa+ G C +G+rC+FaHg XP_023517365.1 261 YKTKMCDNFAK-GSCTFGERCHFAHG 285 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence |
MDMRKRRPES AFNSNGTFKK HKQELEPLST VGSKSKPCTK FFSTAGCPFG ESCHFLHHVP 60 GGYNVVAQMM NLPPVGSQPS RNMAAPPSVT NGGSSAPSQV KTRMCNKFNT AEGCKFGDKC 120 NFAHGEWELG RPPSHDNPRA MGGHMVGRMG GRMDLPQPGP AASFGASATA KISIDASLAG 180 AIIGKGGINS KQICRQTGAK LSIRDHESDT NLRNIELEGT FEQINEASAM VRELIITVSM 240 AGPGKAPGAM GGGPAPSGSN YKTKMCDNFA KGSCTFGERC HFAHGAAELR KSGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 5e-58 | C3H family protein |